Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq96149 269 5e-67 seq97584 215 1e-50 >seq96149 Length=6040 Score = 269 bits (298), Expect = 5e-67 Identities = 489/708 (69%), Gaps = 12/708 (2%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||||||||| || |||||||| ||||| || | ||||||| |||| | ||||||| Sbjct 1040 TGGCCTTCTTTGCTGCCTCTGATGGCATTGTGACTGAGAACTTGGCTGGGCGCTTCATGA 1099 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| | ||| |||||| ||||||||||||||||| ||||| ||||| |||||| Sbjct 1100 CAGAGATTCAGATTCCTGAGGCTCGCTGCTTCTACGGCTTTCAGATTGCCATTGAGAACA 1159 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| || |||| || || || |||| ||| | ||| | ||||||| Sbjct 1160 TTCACTCGGAAATGTATTCCCTCTTGATCGACACCTACGTGAAGGACCACGTCGAGAAGG 1219 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| || || |||| | |||||||||| || || ||||| | Sbjct 1220 ATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTC 1279 Query 42664 TCAACTGGATCG---AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 |||| ||||| | ||||| | | || ||| ||||| |||| || || ||| Sbjct 1280 TCAAATGGATTGAAAAGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCG 1339 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 |||| || |||||||||||||| || |||| |||||||| ||||||||| ||| || Sbjct 1340 CCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGG 1399 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 ||||| || ||| |||| || || | |||||||| || ||||| || ||| Sbjct 1400 GCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATT 1459 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | ||||||||||| ||||||| | ||| ||| || ||| || | || | | Sbjct 1460 GCGACTTTGCCTGTCTCCTGTAC---AGCATGCTCGTCAACCGGCCTTCCACTGA-CATG 1515 Query 42901 TCCGGGC-CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 || | ||||||| |||||| |||||||| || ||||| || || | ||||||| Sbjct 1516 CCCACACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTT 1575 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 || || ||| | || |||||| || |||||||| | ||||| | | || || Sbjct 1576 CCTGTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCA 1635 Query 43020 GACCATCTCCT-GTGCCAGATGGGT-CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 ||| || || || | ||| | ||| | ||||||||||| | ||||||| Sbjct 1636 GACAGACTTCTCGTCGCTCTTGGATGCTC--CAAGGTCTACAACACGGCCAACCCCTTCC 1693 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | ||||| | || ||| || ||||||||||||| || || |||| Sbjct 1694 CTTGGATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTTGAGA 1741 >seq97584 Length=40438 Score = 215 bits (238), Expect = 1e-50 Identities = 1103/1731 (64%), Gaps = 81/1731 (5%) Strand=Plus/Plus Query 243730 GGGAGCCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCC 243789 |||| | ||| ||||||||| || | |||| | ||| | |||||||||||||| Sbjct 28134 GGGATCAACGGTGAACTGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATGCC 28193 Query 243790 GGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAG 243849 ||||| || || | ||| |||| | |||||| | ||| || ||| | | Sbjct 28194 AGTCTTTAGGCCCTTCTTCCATGCGTAAAAGTGCATCGACGTGAG--------TCTGGCG 28245 Query 243850 CTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGC 243909 | || | || || || | | | ||| ||| |||||| ||||||| | | | || Sbjct 28246 AATGAGGGCT--CT-GC-CATATATACGTTTAGGCTCTGGCTTTGGTCGATGTACGCTGC 28301 Query 243910 CCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGAT 243969 || || || |||||| | ||| ||||| ||||| | | || ||||| | Sbjct 28302 TCGGTCAGCTGCCATGTCTAAGAGAATACGCTGAGGAATCTCCCAAACTGTTTTGTACAA 28361 Query 243970 GGGCTTGAGGT-GCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGA 244028 | ||||||| | ||| ||| | | | || ||| ||||| || || ||||| | | | Sbjct 28362 GCGCTTGAGCTCGCTTGGG-ATCTCGTCTATGGCTTGCACGGATCCATTGTGCGCAACAA 28420 Query 244029 GCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC 244088 ||| | | ||| || |||||||| |||| | ||| || || || ||| Sbjct 28421 GCTTGTTCTTCATTGCATGATTCCACAGACCCAGTGCCATCAGATCCCTGAGCAAGTGTT 28480 Query 244089 TGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148 ||| | |||| ||| ||||| | || | ||| | ||||| || || | Sbjct 28481 CGTTGATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAG 28540 Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 |||| | || ||| ||||||| |||||||| | || || |||||||| || | | Sbjct 28541 GCTCAAAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAA 28600 Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCC 244267 |||||| ||||| | || ||||| ||| | ||| |||| | ||| ||| Sbjct 28601 CCAGCAAGCTGTTGCGCAGACCGTGT-TCTACAATGCTTGCCTTGAGGGAGGCCCAATCC 28659 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || || |||| | || | | |||||| |||||||| || | || ||| Sbjct 28660 CAA-----CGGGAGGA--TGGC--TCAACATTCCACATATCAAACTGTAGTATGCCTTTG 28710 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC-T 244386 || || ||| | | || |||||||| || | || ||||||| | | Sbjct 28711 CTCGTTGGAGAGCCGGCAAATGTGGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGAT 28770 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || ||| ||||| | ||||| |||||||| || ||| | | |||| |||| Sbjct 28771 GATGT-GAGAGCGGCAAAATAGATTGTCTCGAAAATGTCGCGGTTGAGGGCGCGTGCCTC 28829 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 ||| | | || |||| || | | ||||||||| || || ||||| || || | Sbjct 28830 TTCGCTGTCCCAAGGCATGCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAG 28889 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||| || || ||||| || |||||||| || |||||| | || ||||| ||||| | Sbjct 28890 GCCAATAGGCCTGTGACGTCTGTTGGAGTGCTCGGCTTCTGCAACTGGGTAGTAGTTGAC 28949 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||| || |||||||| | |||||| |||| || ||| || || ||| Sbjct 28950 GTCTATTACCTTGTTCAAGTTGCGCGTGACCACCTTGACCACCTC------------AAA 28997 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT----CACAAACTCGTTGAGGGCGA 244682 | | ||||| |||| | || | || | |||| | || ||| || Sbjct 28998 GAGCTTCTCGT---GATCAAATACCATTTTC-TCTTTGTCCACATA----TTTAGGCAGA 29049 Query 244683 CGC--TG--GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 | || || || || || |||||||| || | | ||| |||||||||| || Sbjct 29050 GCCATTGAAGCGAGATTACATACGGCCACTTCTTTGGGTGATGTGAACTGGACAATTTCA 29109 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||| ||||| || | |||||||| ||||||||||| ||||| || ||||||||| Sbjct 29110 GTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCGTTGCAG 29169 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 |||||||||||||| | || |||||||| | ||||| | | || | | Sbjct 29170 TGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTATTTGGGCTTCCAAGATGGCAAAC 29229 Query 244859 CAGAGGTCCCTAGCCTTGAC----CGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGT 244914 || || || |||||| || |||| ||| | |||||| ||| ||||| || Sbjct 29230 CAAAGCTCTTGAGCCTTAACAGCACGTCTTGCACG----GCCCTCGCGCTCATAGCGTGT 29285 Query 244915 GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCA 244974 |||||| |||| || || | ||||| || | || || || | || || Sbjct 29286 GTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACA 29345 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 | || ||| || || || ||| || |||| |||||| || ||||| | ||| || Sbjct 29346 AAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAG 29405 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 || |||||||| || |||| | |||||| ||| ||| |||||| |||||||||| Sbjct 29406 AGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAA 29465 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 ||| ||||||| ||| ||||||| ||||||| |||| |||| || || || ||| Sbjct 29466 AAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTT 29525 Query 245155 GTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTA 245213 | || || || || || | | | | | | ||| | | ||||| | || | | Sbjct 29526 GCCACCACCTTGATCTACGTAGCGTGCTGTG-TCATTGTACACTCGCAGCATTGGAATGA 29584 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC--CCTGAGGTTGCT 245271 ||||| || ||||||||||||| ||||||| | | ||| | | || || | Sbjct 29585 GACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAG---TTGGCAGCACGAATTT--T 29639 Query 245272 GATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATG- 245326 | || || | || | ||| |||||| ||| || || | |||||| || || | | Sbjct 29640 G-TGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCA-CTGTTTAAGC 29697 Query 245327 GTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGC 245386 ||||| ||| || || |||||||| | |||||| | || ||||| || || || Sbjct 29698 GTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGT 29757 Query 245387 TG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 || || | ||| | ||| | ||||| || ||||| |||| || || || Sbjct 29758 TGTGGTCGTGGCG-TGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAA 29807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943179457028480