Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq97584 215 6e-51 >seq97584 Length=40438 Score = 215 bits (238), Expect = 6e-51 Identities = 925/1440 (64%), Gaps = 53/1440 (4%) Strand=Plus/Plus Query 113914 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 ||| || || || | | |||| || |||||||| | ||||| |||||||||||||| Sbjct 28494 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 28553 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||| || | || |||| || || || || ||||| ||||| | || | |||||| Sbjct 28554 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 28613 Query 114034 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 114093 || ||||| | ||| ||||| | ||||||||| | |||| || | | || Sbjct 28614 GCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGATGG 28673 Query 114094 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGT 114153 ||| | | ||||||||||||||| || || |||| | | ||| || || ||||||| Sbjct 28674 CTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAATGT 28733 Query 114154 CTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 114213 ||| || || | ||| |||| ||| | | ||| || || ||| || Sbjct 28734 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTGAGAGCGGCAAAATAGAT 28793 Query 114214 TGTCTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC 114272 |||||| |||||| || | || | || ||||| ||| || | | | || Sbjct 28794 TGTCTCGAAAATGTCGCG-GTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA 28852 Query 114273 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 114332 | | || || || || || ||||| || || || |||||||| || | || | | | Sbjct 28853 AGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGT 28912 Query 114333 TAGACT-TTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 114390 | || | ||| || ||| | || || || | || || || ||| | || | || Sbjct 28913 TGGAGTGCTCG-GC-TTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTT 28970 Query 114391 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCT 114448 ||||| ||||| | ||| ||||| |||| |||||| | | | ||||| Sbjct 28971 GCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAA--TACCATTTTCTCT 29028 Query 114449 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT- 114507 | | ||||| ||||| || || ||||| || |||||||| || || | | || || Sbjct 29029 TTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATAC---GGCCACTTCTTTG 29085 Query 114508 -ATCA-GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 114565 | | ||| ||| | |||||| || || | || |||| | ||||||||| | || | Sbjct 29086 GGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGC 29145 Query 114566 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 114625 | || || || || | ||| || ||||||||| ||||| || || || || ||||| Sbjct 29146 TGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCT 29205 Query 114626 GTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGT-TGGCTCG 114684 |||||| | | || || ||| | || || |||| ||| | || || Sbjct 29206 ATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAG-CACGTCTTGCACG 29264 Query 114685 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 114744 ||||| ||| || |||||| || | ||||| || | ||| ||| || Sbjct 29265 GCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAG 29324 Query 114745 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 |||||||||| || || || || || ||||| | || || |||| || | || ||| Sbjct 29325 ACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCAT 29384 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCC 114862 ||| || || || | ||| ||||| ||||||||| | || ||| ||||| | Sbjct 29385 GAACAGATCGGGTACCCACAGAGCATGGAAGAGATCTC--TGGCTCGCTGCTCTTCCTTG 29442 Query 114863 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 114922 || || || || ||||||||| || | ||| ||||||||||| || ||||| || Sbjct 29443 CCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAG 29502 Query 114923 ACCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTA 114979 | |||| || ||||| | | |||| | || | ||| || | |||||| |||| Sbjct 29503 ATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTG 29562 Query 114980 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAG 115037 | || || ||||||||||||| ||| | || ||| || || |||| || |||||| Sbjct 29563 TACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAG 29622 Query 115038 ACTTATTGGCTCTGACATCATGGA---TGTGC------ATACCAATACCCCCTGCCCACT 115088 |||| || || | | ||||| | |||||| || || || | || Sbjct 29623 -----TTGG------CAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCT 29671 Query 115089 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACC---CT 115145 | || || ||||||| | || || |||| ||||| || || ||| | | Sbjct 29672 TAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCA 29731 Query 115146 TATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGG 115205 | || || |||||||| || | |||||| | ||| || ||||| ||||| || | Sbjct 29732 TGTTAACG---AGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTG 29788 Query 115206 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGG 115265 | || || || || |||| | ||| || || || || |||||||| || || Sbjct 29789 TGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTC 29848 Query 115266 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 115325 ||||| | ||| | || | | || ||||| ||||||| |||||| | |||| Sbjct 29849 TGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCA 29908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596619990043840