Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq97451 95.1 9e-15 seq91747 91.5 1e-13 seq93431 89.7 4e-13 seq85083 89.7 4e-13 seq97888 86.0 4e-12 seq89129 86.0 4e-12 seq96154 84.2 2e-11 seq96095 84.2 2e-11 seq96238 82.4 5e-11 >seq97451 Length=8672 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || ||||| |||||||| ||| ||| | | |||| || Sbjct 7611 ACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTCG 7670 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||||||||| || ||| ||||| || |||||||| Sbjct 7671 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGG 7730 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || ||| |||| | || || || | ||| ||||| || Sbjct 7731 ATCTTCTGTTTCACATTCTCGATACTATCAGAAGACTCAACTTCGAGGGTGATGGTCTTG 7790 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 7791 CCGGTCAAGGTCTTAACGAAGATCTGCATA 7820 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| |||||||||||| ||| | | |||| || Sbjct 8364 ACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGC-AGAGTACGACCGTCCTCG 8422 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | |||| |||||| || || ||||| ||||||||||| | Sbjct 8423 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGA 8482 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||| |||| | || || || | ||| ||||| || Sbjct 8483 ATCTTCTGCTTGACGTTCTCAATACTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 8542 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 8543 CCAGTCAAGGTCTTGACGAAGATCTGCAT 8571 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || ||||| || ||||| |||||||| ||| ||| | | |||| || Sbjct 7383 ACCAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTCG 7442 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | ||||||||||| || ||| ||||| || |||||||| Sbjct 7443 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGT 7502 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || |||| | || || || | ||| ||||| || Sbjct 7503 ATCTTCTGCTTCACATTCTCGATGCTATCAGAAGACTCAACTTCGAGGGTGATGGTCTTG 7562 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 7563 CCGGTCAAGGTCTTAACGAAGATCTGCATA 7592 >seq91747 Length=1618 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||||||||| || ||||| ||||| || ||| ||| | | | |||| || Sbjct 527 ACCAAATGAAGGGTAGATTCCTTTTGGATGTTATAGTCGGCGAGTGTACGCCCGTCCTCC 468 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| ||||| || |||||||| | Sbjct 467 AGCTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGA 408 Query 15088 A--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || || | || || |||| || || || | ||||||||| | Sbjct 407 ATCTTTTGC--TTCACGTTCTCGATGCTATCAGAGGACTCCACTTCAAGGGTAATGGTCT 350 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||| || || || || || ||||| Sbjct 349 TGCCAGTCAATGTCTTCACGAAGATCTGCAT 319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||| || || | | |||| || Sbjct 1211 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCTGCCAGTGTACGACCGTCCTCG 1152 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| ||| || ||||||||||| Sbjct 1151 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGG 1092 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||| | || || |||| | || || || ||||| ||||| ||| Sbjct 1091 ATCTTCTGCTTTACGTTCTCAATGCTATCAGAGCTCTCCACCTCCAAGGTGATGGTCTTA 1032 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 1031 CCGGTCAAGGTCTTAACGAAGATCTGCAT 1003 >seq93431 Length=4049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | || ||| | ||||||||||| || || || |||||||| ||| Sbjct 3746 TGCCACCTCTAAGGCGTAGAACGAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGG 3687 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | |||| || | || ||||||||| | ||||||||||| || ||| | Sbjct 3686 CCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAG 3627 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| ||| || || || | || |||| || ||| | Sbjct 3626 GAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCAGAGGATTCGA 3567 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||| || ||||| || || || || || ||||| ||||| Sbjct 3566 CTTCCAGAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 3518 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| |||||||||||| ||| | | |||| || Sbjct 3953 ACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGC-AGAGTACGACCGTCCTCG 3895 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | |||| |||||| || || ||||| ||||||||||| | Sbjct 3894 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGA 3835 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||| |||| | || || || | ||| ||||| || Sbjct 3834 ATCTTCTGCTTGACGTTCTCAATACTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 3775 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 3774 CCAGTCAAGGTCTTGACGAAGATCTGCAT 3746 >seq85083 Length=2832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CTGAGAATTCTCGCGTC 15023 || || || |||||||| || |||||||| |||||||| ||| || || | | | || Sbjct 65 AACACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGCTAAGG-TACGGCCATC 123 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || | || ||||||||| | ||||||||||| || || ||||| || |||||||| Sbjct 124 CTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGGGGAATACCCTCCTTGTC 183 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| || || || |||| || | || | || || || | ||| ||||| Sbjct 184 TTGAATCTTCTGCTTGACGTTTTCGATGGAGTCAGAGCTCTCAACCTCAAGGGTGATGGT 243 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||| |||||||| || ||||| Sbjct 244 CTTGCCAGTCAAAGTCTTTACAAAGATCTGCAT 276 >seq97888 Length=8055 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||||||| | || | |||||| ||||| || ||||| |||||||| ||| Sbjct 2439 CCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 2380 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | || || | || ||||| || | |||||||| || ||||| ||| Sbjct 2379 AAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGGA 2320 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || || || ||| | || || | || ||| || Sbjct 2319 ATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGACC 2260 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||||||||| || || || || ||||| ||||| ||||| Sbjct 2259 TCAAGGGTAATGGTTTTTCCAGTGAGGGTCTTTACGAAAATCTGCAT 2213 >seq89129 Length=1308 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| |||||||||||| ||| | | |||| || Sbjct 97 ACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGC-AGAGTACGACCGTCCTCG 155 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | |||| |||||| || || ||||| ||||||||||| | Sbjct 156 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGA 215 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||| |||| | || || || | ||| ||||| || Sbjct 216 ATCTTCTGCTTGACGTTCTCAATACTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 275 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 276 CCAGTCAAGGTCTTGACGAAGATCTGCAT 304 >seq96154 Length=12494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||| || || | | |||| || Sbjct 11944 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCTGCCAGTGTACGACCGTCCTCG 12003 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| ||| || ||||||||||| Sbjct 12004 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGG 12063 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||| | || || |||| | || || || ||||| ||||| ||| Sbjct 12064 ATCTTCTGCTTTACGTTCTCAATGCTATCAGAGCTCTCCACCTCCAAGGTGATGGTCTTA 12123 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 12124 CCGGTCAAGGTCTTAACGAAGATCTGCAT 12152 >seq96095 Length=8987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| ||| ||| | | |||| || Sbjct 6891 ACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCA 6832 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || || | || | |||||| || || || || || |||||||| | Sbjct 6831 AGCTGTTTACCTGCAAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGA 6772 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || || | || | || || || || || ||||| || Sbjct 6771 ATCTTCTGTTTCACATTCTCGATGCTGTCAGAAGACTCCACTTCCAAAGTGATGGTCTTG 6712 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||||||||| || ||||| Sbjct 6711 CCAGTCAGAGTTTTTACAAAGATCTGCAT 6683 >seq96238 Length=7505 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || || || |||||||| ||| ||| | | |||| || Sbjct 6769 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGACCGTCCTCA 6710 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | |||||| ||||| ||||| ||||||||||| Sbjct 6709 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGT 6650 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || |||||| | || || | || ||| || || | |||||||||||| Sbjct 6649 ATCTTCTGCTTTACATTCTCGATGCTGTCAGAGGATTCGACCTCAAGGGTAATGGTTTTT 6590 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||| |||||| Sbjct 6589 CCGGTGAGGGTCTTCACGAAAATCTGCATA 6560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356964059712680