Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq97888 114 1e-20 seq91747 113 4e-20 seq96095 104 2e-17 seq95571 98.7 9e-16 seq86730 91.5 1e-13 seq96238 86.0 6e-12 seq7635 84.2 2e-11 seq98102 82.4 7e-11 >seq97888 Length=8055 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | || | ||| ||||| || || || ||||||||||| || || ||| Sbjct 2440 TCCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGC 2381 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || | || || ||||| | ||||| ||||||||||| || || Sbjct 2380 CAAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGG 2321 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||| || || ||||| || || || || | || | | |||| || || ||||| Sbjct 2320 AATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGAC 2261 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||| || || || || ||||| ||||| ||||| Sbjct 2260 CTCAAGGGTAATGGTTTTTCCAGTGAGGGTCTTTACGAAAATCTGCAT 2213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| ||| || | ||| Sbjct 1503 TGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCGAGTTGC 1444 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || || ||||| || || ||||| || || ||||| || || Sbjct 1443 TTACCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTC 1384 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || || | || | || || || ||||| |||||||| |||| ||||||||||| Sbjct 1383 TGCTTCACATTCTCGATGGAATCAGAGGACTCCACTTCGAGGGTAATAGTTTTGCCGGTC 1324 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || ||||| Sbjct 1323 AGAGTCTTTACGAAGATCTGCAT 1301 >seq91747 Length=1618 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| | ||| || || |||||||||||||| ||||| ||| Sbjct 548 ATGCCTCCTCGAAGGCGAAGCACCAAATGAAGGGTAGATTCCTTTTGGATGTTATAGTCG 489 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||| || || |||||| | ||||| || |||||||| || Sbjct 488 GCGAGTGTACGCCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCAGGG 429 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || |||||||| ||||| || | || | || | | | || || ||||| Sbjct 428 GGAATGCCCTCCTTGTCTTGAATCTTTTGCTTCA-CGTTCTCGATGCTATCAGAGGACTC 370 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || ||||| || | || || || || || ||||| Sbjct 369 CACTTCAAGGGTAATGGTCTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 319 >seq96095 Length=8987 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || |||||||||||||| || ||| | ||| || || Sbjct 7589 CACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCGGCCAAGGTGCGGCCGTCCTC 7530 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || ||||| | |||| || ||||| || || || ||||| || |||||||| Sbjct 7529 CAACTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGTGGGATGCCCTCCTTATCTTG 7470 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| ||||| |||| || | || | | |||| || || ||||| | ||| | || | Sbjct 7469 AATCTTTTGCTTGA-CGTTCTCGATGCTGTCAGAGCTTTCCACTTCCAAAGTGATGGTCT 7411 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | |||||||||||| || ||||| Sbjct 7410 TGCCAGTCAAAGTTTTTACAAAGATCTGCAT 7380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| || || || || | ||| Sbjct 6885 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGT 6826 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || | || ||||| || || || ||||| || || |||||||| || Sbjct 6825 TTACCTGCAAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATCTTC 6766 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | | |||| |||||||| ||||| | ||| | || ||||| || Sbjct 6765 TGTTTCACATTCTCGATGCTGTCAGAAGACTCCACTTCCAAAGTGATGGTCTTGCCAGTC 6706 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||||| || ||||| Sbjct 6705 AGAGTTTTTACAAAGATCTGCAT 6683 >seq95571 Length=1702 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || |||||||| ||||| || ||| | ||| | ||| || | || Sbjct 94 ATGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGCCAAGGTACGACCATCCTCAAGCTG 153 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || |||||| | || | || || ||||| || || ||||| || || || || || || Sbjct 154 CTTGCCTGCGAAGATGAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 213 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| | || | || || || ||||| |||||||| |||| ||||||||||| Sbjct 214 CTGTTTCACATTCTCAATGGAATCAGAGGACTCCACTTCGAGGGTAATAGTTTTGCCGGT 273 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || ||||| Sbjct 274 CAGAGTCTTTACGAAGATCTGCAT 297 >seq86730 Length=750 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | || | ||| ||||| || || || ||||||||||| || || ||| Sbjct 199 TCCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGC 140 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || | || || ||||| | ||||| ||||||||||| || || Sbjct 139 CAAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGG 80 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||| || || ||||| || || || || | || | | |||| || || ||||| Sbjct 79 AATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGAC 20 Query 45293 TTCGAGAGTAACCGTTTT 45310 || || |||| ||||| Sbjct 19 CTCAAGGGTAATGGTTTT 2 >seq96238 Length=7505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || || || || || || |||||||| ||||| || || || Sbjct 6327 ATGCCTCCCCTAAGGCGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCA 6268 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || ||||| | ||||| || ||||| || ||| Sbjct 6267 GCCAAGGTGCGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGC 6208 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || || || | ||| | | |||| || || Sbjct 6207 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACATTTTCGATGCTGTCCGAGCTTTCA 6148 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || | |||||| || ||||| ||||| Sbjct 6147 ACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAAATCTGCAT 6098 >seq7635 Length=180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || ||||| | || | || || ||||| || || |||||||| ||||||||||| Sbjct 35 TGCTTGCCTGCAAAGATGAGGCGCTGTTGGTCTGGTGGGATGCCTTCCTTATCTTGAATC 94 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 ||||| || | || | | |||| || ||| || || | ||| | || |||||| Sbjct 95 TTTTGCTTCACATTCTCGATGCTGTCAGAGCTCTCCACCTCTAAAGTGATGGTCTTGCCG 154 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||||||||||| |||||||| Sbjct 155 GTCAAAGTTTTTACAAAGATTTGCAT 180 >seq98102 Length=5793 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | || | || || | || Sbjct 4792 TGGAGGGTAGATTCCTTTTGGATGTTGTAGTCAGCAAGTGTCCTGCCGTCCTCGAGCTGC 4733 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| || |||||||| || || ||||| || || || || || || Sbjct 4732 TTGCCTGCAAAGATCAAACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTC 4673 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || || | ||| | | |||| || ||||| || || | ||| | || || ||||| Sbjct 4672 TGCTTCACGTTTTCGATGCTGTCAGAGGACTCCACCTCCAAAGTGATGGTCTTTCCGGTC 4613 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | |||||||||||| || ||||| Sbjct 4612 AAAGTTTTTACAAAGATCTGCAT 4590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451448094870080