Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq97584 214 2e-50 >seq97584 Length=40438 Score = 214 bits (236), Expect = 2e-50 Identities = 922/1431 (64%), Gaps = 35/1431 (2%) Strand=Plus/Plus Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 ||| || || || | | |||| || ||||| || | ||||| |||||||||||||| Sbjct 28494 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 28553 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||| || | || |||| || || || || ||||| ||||| | || | |||||| Sbjct 28554 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 28613 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 ||| ||||| | ||||| | ||||||||| | |||| || | | || Sbjct 28614 GCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGATGG 28673 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 ||| | | ||||||||||||||| || || |||| | || ||| || || ||||||| Sbjct 28674 CTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAATGT 28733 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 || || || | ||| |||| ||| | | ||| || || ||| || Sbjct 28734 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTGAGAGCGGCAAAATAGAT 28793 Query 116175 TGTCTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 |||||| |||||| || | || | || ||||| ||| || | | | || Sbjct 28794 TGTCTCGAAAATGTCGCGG-TTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA 28852 Query 116234 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 116293 | | || || || || || ||||| || || || |||||||| || | || | | | Sbjct 28853 AGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGT 28912 Query 116294 TAGACTT-TCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 | || | ||| || ||| || | || || | || || || ||| | || | || Sbjct 28913 TGGAGTGCTCG-GCT-TCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTT 28970 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT--CTCT 116409 ||||| ||||| | ||| ||||| |||| |||||| | | | | |||| Sbjct 28971 GCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAA--TACCATTTTCTCT 29028 Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 | | ||||| ||||| || || ||||| || |||||||| || || | | || || Sbjct 29029 TTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATAC---GGCCACTTCTTTG 29085 Query 116470 --TCA-GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | | ||| ||| | |||||| || || | || |||| | ||||||||| | || | Sbjct 29086 GGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGC 29145 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 | || || || || | ||| || |||||||||||||||||| || || || ||||| Sbjct 29146 TGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCT 29205 Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGT-TGGCTCG 116645 |||||| | | || || ||| | || || |||| ||| | || || Sbjct 29206 ATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAGCA-CGTCTTGCACG 29264 Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACA---GCCTCTGA 116702 ||||| ||| || |||||| || ||||||| || | ||| || | || ||| Sbjct 29265 GCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCC-CATTTGTCT-TGA 29322 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 || |||||||||| || ||||| || || ||||| | || || |||| || | || Sbjct 29323 -AGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTC 29381 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCA 116820 |||||| || || || | ||| || || ||||||||| | || ||| ||||| Sbjct 29382 CATGAACAGATCGGGTACCCACAGAGCATGGAAGAGATCTCTG--GCTCGCTGCTCTTCC 29439 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || || ||||||||| || | ||| ||||||||||| || ||||| Sbjct 29440 TTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGA 29499 Query 116881 TACACCGCGATTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 || | |||| || ||||| | | |||| | || | ||| || | || || | Sbjct 29500 TAGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCA 29559 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATAC 116995 || | || || ||||||||||||| ||| | || ||| || || |||| || ||| Sbjct 29560 TTGTACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTAC 29619 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| ||| || | | | ||| | | |||||| || || || | ||| || | Sbjct 29620 GAG--TTGGCAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAA 29677 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | ||||||| | || || |||| ||||| || || ||| | | | | Sbjct 29678 TCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAA 29737 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 ||||||||| || | |||||| | ||| || ||||| ||||| || || || || | Sbjct 29738 CGAGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGG 29797 Query 117176 CGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTT 117235 | || |||| | ||| || || || || |||||||| |||| ||||| Sbjct 29798 CATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTCTGATGTCAG 29857 Query 117236 CCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 | ||| | || | | || ||||| ||||||| |||||| | |||| Sbjct 29858 TCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCA 29908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612753751807680