Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq96149 122 1e-22 seq97584 105 1e-17 seq86817 96.9 6e-15 >seq96149 Length=6040 Score = 122 bits (134), Expect = 1e-22 Identities = 295/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||| |||| || || ||||||||||||| || || || |||||| | ||| Sbjct 1749 CACCTTCCTCTCAAAGAAATTGGTCTTGCCCTGCAGCGAAATCATTTCCATCCAAGGGAA 1690 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||| | || ||| ||| | |||| ||||| | || | ||||||||||| Sbjct 1689 GGGGTTGGCCGTGTTGTAGACCTTGGAGCATCCAAGAGCGACGAGAAGTCTGTCTGCCAC 1630 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 |||||| ||||| |||||| || | ||| || || | || | ||| || |||| Sbjct 1629 AAATTCAATGTATTGACACATGAGCGCGGCGTTCATTCCAATGAGGCCAACAGGAAGCGA 1570 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCG-AGACACGT- 159880 || || | ||| ||||| |||||||| || || || | | || || | | || || Sbjct 1569 CTCAGAGACAAATTCCTTTTCAATCTCCACAGCCTCCTTGATGATTTGTGTGGGCATGTC 1510 Query 159881 --TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 | | | |||| ||| | | ||| || ||||||| || ||||||||||| | Sbjct 1509 AGTGGAAGGCCGG-TTGACGAGCATGCTGT------ACAGGAGACAGGCAAAGTCGCAAT 1457 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | || ||||| || | ||| ||||| ||| | | |||||| ||||||| || | Sbjct 1456 GAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCAGGCATGAGGCCCC 1397 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCC 160057 | ||||||||||| |||| || |||| || || ||||| || |||||||| Sbjct 1396 TCTTCTTGAGCCAAAAGATGG-AACAGAAGCTTCCAGAGAAGAAGATGCCTTCCACGGCG 1338 Query 160058 GCAAACGCCACGAGCCTCTCA 160078 || || || || | |||||| Sbjct 1337 GCGAATGCAACCAATCTCTCA 1317 >seq97584 Length=40438 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| ||||||| ||||||| | | | | || ||||||||||| ||| Sbjct 28138 TCAACGGTGAACTGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATGCCAGTC 28197 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 ||||||||||||| ||| |||| | |||||| || | ||| || | ||| || Sbjct 28198 TTTAGGCCCTTCTTCCATGCGTAAAAGTGCATCGACGTGAGTCTGGCGAATGAGGGCTCT 28257 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATA 204022 ||||| | | ||| || |||||||||||||||| | | || || || || ||||| Sbjct 28258 GCCATATATACGTTTAGGCTCTGGCTTTGGTCGATGTACGCTGCTCGGTCAGCTGCCATG 28317 Query 204023 TTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | | | | ||| | ||||||||| || || ||| ||| Sbjct 28318 TCTAAGAGAATACGCTGAGGAATCTCCCAAACTGTTTTGTACA 28360 >seq86817 Length=155676 Score = 96.9 bits (106), Expect = 6e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 ||||| | ||||| || ||||| || | | ||| ||||||||||| | | ||||||| Sbjct 53885 GCAAATTTACAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCA 53944 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGAT 160044 |||||||| || ||| |||| |||| |||||| | || |||| || ||| ||||| Sbjct 53945 GGCATGATGCCTCGCTTCTTGATCCAATAAATGG-CACAGAAGCTTCCAGAAAAGAAGAT 54003 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAG 160071 ||||| ||||| ||||| ||||| || Sbjct 54004 GCCCTCGACGGCAGCAAAGGCCACCAG 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794178669898880