Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq97584 192 7e-44 seq96149 132 6e-26 seq86817 84.2 3e-11 >seq97584 Length=40438 Score = 192 bits (212), Expect = 7e-44 Identities = 872/1359 (64%), Gaps = 44/1359 (3%) Strand=Plus/Plus Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 |||| || | ||||| ||| ||| || ||||| | |||| | |||||| |||| Sbjct 28473 CAAG-TGTTCGTTGATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAG 28531 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || || || ||||||||||||||||| || || | ||| ||||| || |||| Sbjct 28532 AAGTGTAAGGCTCAAAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCA 28591 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCC-GCTCACGCATTGCG 109881 | || || | || | ||||| || ||||| | || | ||| ||| || ||| | Sbjct 28592 TAGGTGCAACCAGCAAGCTGTTGCGCAGACCGT--GT-TCTACAATGCTT--GCCTTGAG 28646 Query 109882 T----CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAG 109937 ||||||| |||| || | |||| ||| ||||||||| || || Sbjct 28647 GGAGGCCCAATCCCAACGGGAGG---AT---GGCTCAACATTCCACATATCAAACTGTAG 28700 Query 109938 TACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAA 109997 || || | | ||||| || || | ||| | ||| | ||| |||| Sbjct 28701 TATGCCTTTGCTCGTTGGAGAGCCGGCAAATGTGGGGTAGGGCCCTTGCTCCTTTGCCAG 28760 Query 109998 CTCG---GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 |||| ||||| | || || ||| ||| || ||||| ||||| | || | Sbjct 28761 CTCGTTGGATGATGTG---AGAGCGGCAAAATAGATTGTCTCGAAAATGTCGCGGTTGAG 28817 Query 110055 GAGGCGAGACTCTTCACAGTCG-AAGGGAAGACCACAAAGAATAAACACATCCGCTAGAC 110113 | ||| | |||||| | ||| |||| | | || | |||| || || || || |||| Sbjct 28818 GGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA-AGAGAAGGAAGACGTCAGCAAGAC 28876 Query 110114 CCTGAACACCGAGACCAATGGGGCGATG-CTTCATGTTAGAGCG-TCGAGCAGTTTCTAC 110171 |||| || || || ||||| || | || | || |||| ||| | ||| || | | || Sbjct 28877 CCTGTACTCCAAGGCCAATAGGCCTGTGACGTC-TGTTGGAGTGCTCG-GCTTCTGCAAC 28934 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||||| ||| || ||| || | || ||| || ||| | || Sbjct 28935 TGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTTGCGCGTGACCACCTTGACCACCTC 28994 Query 110232 ATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCA 110289 | ||| || |||| ||| || | ||| |||| || | |||||||| || ||||| Sbjct 28995 AAAGAGCTTCTCGTGATCAAATACCATTT--TCTCTTTGTCCACATATTTAGGCAGAGCC 29052 Query 110290 ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG---TGTATTCCAAAATTTCC 110346 || || || ||||| || || | | | |||||| | || | | | |||||| Sbjct 29053 ATTGAAGCGAGATTACATACGGC---CACTTCTTTGGGTGATGTGAACTGGACAATTTCA 29109 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||||| | |||| || | || || || || ||||| | |||||| Sbjct 29110 GTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCGTTGCAG 29169 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||| |||||||| || |||||||| || || | || | | | ||||| | Sbjct 29170 TGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTATTTGGGCTTCCAAGATGGCAAAC 29229 Query 110467 CATACATCGGCGGCGGGGACAGTTGCGT-TAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 || | || || |||| ||| | || | || || ||| || ||||| Sbjct 29230 CAAAGCTCTTGAGCCTTAACAGCA-CGTCTTGCACGGCCCTCGCGCTCATAGCGTGTGTA 29288 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 || ||||||||||| ||| | || |||||| |||| | |||||| || Sbjct 29289 CAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACAAAA 29348 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 || ||||| | ||| || |||| || |||| ||||||||| || || | ||||| || Sbjct 29349 CAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGC 29408 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 ||| || || | | || |||||| | || ||||| ||||||||||| Sbjct 29409 ATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAA 29468 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC---GACG 110762 || | ||| |||| |||||| || || ||||||| |||| | |||||| | | Sbjct 29469 CTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCC 29528 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 ||| | || | || |||||||||||| ||||| | || | ||||| ||||| | || Sbjct 29529 ACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACC 29588 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| || || || ||||| || || || |||||||| | ||| | | Sbjct 29589 GTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAGCACGAATTTTGTGCACACT 29648 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAAT 110942 | |||||| || || || | |||| ||| || |||| | | || || | || || Sbjct 29649 AAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATAT 29708 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 || || || ||| | | || || || ||||| ||||| | || || || || Sbjct 29709 CCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGG 29768 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||| || |||||||| ||||| || || |||||| |||| Sbjct 29769 CGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAA 29807 >seq96149 Length=6040 Score = 132 bits (146), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | |||||| |||||||| || || Sbjct 1470 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1411 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || || ||||| ||||||||||||| ||| || |||||||| |||||||| Sbjct 1410 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1351 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GT-----CGAGACTTGTC 119668 ||| ||||| |||||| || | | | ||||| |||| || | | ||| || Sbjct 1350 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 1291 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||| ||||||||||| | || || || | | || ||||| | |||||| | Sbjct 1290 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 1231 Query 119729 GAAAAGTTGCTTCTTTTC 119746 ||| || || | ||| || Sbjct 1230 GAAGAGATGATCCTTCTC 1213 >seq86817 Length=155676 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 119463 GGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTTGATGAAGCCCTTCATCC 119522 || |||||| ||| | ||| || | | | |||||||| || || || ||||| Sbjct 53852 GGCTTGTTTTCCAACATTTTGAAGAGCAAGATGGCAAATTTACAGTGGAGGCCCTCATCT 53911 Query 119523 CGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAA 119582 | | ||| | ||| || || | || |||||||||| |||| ||||| | |||| Sbjct 53912 CTGGCGATAAACTCGTTGGAGAGGGTGAGGCCAGGCATGATGCCTCGCTTCTTGATCCAA 53971 Query 119583 AAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 | |||||||| || ||||||||||||||||||||||| || Sbjct 53972 TAAATGGCACAGAAGCTTCCAGAAAAGAAGATGCCCTCGAC 54012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588252678574400