Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq97584 136 5e-27 seq96149 87.8 2e-12 >seq97584 Length=40438 Score = 136 bits (150), Expect = 5e-27 Identities = 578/902 (64%), Gaps = 37/902 (4%) Strand=Plus/Plus Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 |||||| | ||||| || || || || ||||| || | ||| || || ||| || | Sbjct 29024 TCTCTTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATACGGCCACTTCTT 29083 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 |||| ||| | |||||| || || | |||||||| | ||| || || | | Sbjct 29084 TGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGT 29143 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 || ||||| || |||||| ||||||||||||||| || || || || |||| Sbjct 29144 GCTGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCT 29203 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAATGGCGT-TGGC 106674 | | || | | | || || ||| | || | | || || | ||| | || Sbjct 29204 CTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCT--TAACAGCACGTCTTGC 29261 Query 106675 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 106734 || ||||| ||| || |||||| || | ||||| || | ||| ||| Sbjct 29262 ACGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTG 29321 Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794 ||||||||||||| | ||||| || || ||||| | || || |||| || | || Sbjct 29322 AAGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTC 29381 Query 106795 CATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 106853 |||||| || || || | |||||| | ||| ||||||||||| || |||||| | Sbjct 29382 CATGAACAGATCGGGTACCCACAGAGCATG-GAAGAGATCTCTGGCTCGCTGCTCTTCCT 29440 Query 106854 CACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 106913 || ||||| | | ||| | ||||| | ||| ||||||||||| ||||| |||| Sbjct 29441 TGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGAT 29500 Query 106914 AGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 106970 ||| ||||| | |||||| | | ||| |||||| ||| ||||| |||||| | | Sbjct 29501 AGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCAT 29560 Query 106971 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACG 107028 | | || || ||||||||||| | ||| | || || || || |||| || |||| Sbjct 29561 TGTACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACG 29620 Query 107029 AGATTTATTGGCTCTCACATCATGGA---TGTGC------ATCCCAATACCCCCAGCCCA 107079 || |||| || || | | ||||| | ||||| || || || | Sbjct 29621 AG-----TTGG------CAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCT 29669 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC--- 107136 ||| || || || |||| |||| || | || || || | || ||| || Sbjct 29670 CTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTG 29729 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 | |||| || |||||||| || | || |||| ||| || ||||||||||| || Sbjct 29730 CATGTTAACG---AGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAG 29786 Query 107197 GGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 || || || || ||| |||| | ||| || || | || |||||||| |||| Sbjct 29787 TGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGC 29846 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 ||||| | ||| | || | || || ||||| ||||||| |||||| | || Sbjct 29847 TCTGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTC 29906 Query 107317 CA 107318 || Sbjct 29907 CA 29908 >seq96149 Length=6040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || || |||||||||| | || | ||||| |||||| ||||| Sbjct 1470 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1411 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| |||| |||||| | |||| | || | ||||| || ||||||||||| Sbjct 1410 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1351 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG----AGCGAGACTTTGTGT 117448 || ||||| || || |||| | | ||| | ||| | || | ||| | | | Sbjct 1350 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCT-TTT 1292 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| |||||| | ||||| | || ||||||| | | | || ||||| | |||||| Sbjct 1291 CAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589256244579520