Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq97584 255 1e-62 seq96149 168 1e-36 >seq97584 Length=40438 Score = 255 bits (282), Expect = 1e-62 Identities = 1199/1877 (64%), Gaps = 78/1877 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | | ||||| |||| ||||||||| ||||||||||| |||||| Sbjct 28141 ACGGTGAACTGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATGCCAGTCTTT 28200 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 |||||||| ||| ||| | |||||| | |||||| | | || || Sbjct 28201 AGGCCCTTCTTCCATGCGTAAAAGTGCATCGACGTGAGTCTGGCGA-------ATGAGGG 28253 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||| || ||| || || ||| ||| ||| || ||||| ||| | | || | | Sbjct 28254 -----CTC-TG--CCATATATACGTTTAGGCTCTGGCTTTGGTCGATGTACGCTGCTCGG 28305 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 ||||| |||||||||| || | | ||| | | |||||| || || ||| | | Sbjct 28306 TCAGCTGCCATGTCTAAGAGAATACGCTGAGGAATCTCCCAAACTGTTTTGTACAAGCGC 28365 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGC 212852 ||||| || ||||| || ||| ||||| || || |||| |||| Sbjct 28366 TTGAGCTCGCTTGGGATCTCGTCTATGGCTTGCACGGATCCATTGTGCGCAACAAGCTTG 28425 Query 212853 AGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTG 212912 ||| | | ||||| || ||| | | ||| | ||| || ||| |||| Sbjct 28426 TTCTTCATTGCATGATTCCACAGACCCAGTGCCATCAGATCCCTGAGCAAGTGTTCGTTG 28485 Query 212913 ACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCG 212972 | | | ||||| || | | | | ||| ||| | || |||||||| ||||| Sbjct 28486 ATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCA 28545 Query 212973 ATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGG 213032 | || ||| ||||| || || ||||| | ||| || || ||||| || || ||||| Sbjct 28546 AAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGC 28605 Query 213033 AGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTG 213092 | ||||| | || ||||| || | ||| | || ||||| ||||| | | Sbjct 28606 AAGCTGTTGCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGG 28665 Query 213093 CCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACG 213152 || | || || |||||||| |||||||| | |||||||||||| Sbjct 28666 GAGGATGGCTCA---------ACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTT 28716 Query 213153 GGGCTGCCCTGGTAA--GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCT 213210 || ||| || || | || |||||| || |||||||| ||||||||| ||| | Sbjct 28717 GGAGAGCC--GGCAAATGTGGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATG 28774 Query 213211 GCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG 213270 || || || | ||||| || || || || || | |||||| |||||| | Sbjct 28775 TGAGAGCGGCAAAATAGATTGTCTCGAAAATGTCGCGGTTGAGGGCGCGTGCCTCTTCGC 28834 Query 213271 ACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGA 213330 | ||||| || | | |||| || ||||| || ||||| || || | ||| | Sbjct 28835 TGTCCCAAGGCATGCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAA 28894 Query 213331 TGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAG-GGGTAAAAGTTGCAG 213386 | || ||||| | ||| || || || || || ||| ||||| ||||| | Sbjct 28895 TAGGCCTGTGACGTCTGTTGGAGTGCTCGG----CTTCTGCAACTGGGTAGTAGTTGACG 28950 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 || || | |||||| | |||||| ||| |||| ||| || | || | ||||||| Sbjct 28951 TCTATTACCTTGTTCAAGTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGA 29010 Query 213447 TTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506 | || || | | | | |||| | | |||||| || || || || || || Sbjct 29011 TCAAATACCATTTTCTCTTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACAT 29070 Query 213507 ACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566 |||||||| || | | |||| ||| | || || ||||| |||||| ||| | Sbjct 29071 ACGGCCACTTCTTTGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGA 29130 Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTA 213625 |||||||| |||| ||||||||| || || |||||| ||| ||||||||||||||| || Sbjct 29131 ATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCGTTG-CAGTGATCCTTGTAGAGCATATA 29189 Query 213626 GGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG-GCCTT 213682 |||| |||||||||| |||| ||| || ||| ||| || | | || ||||| Sbjct 29190 AGGGGTACCGGTCTCTATTTGGGCTTCCAAGAT--GGCAAACCAAAGCT-CTTGAGCCTT 29246 Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATT 213741 || | || || || ||| | | || ||| || || ||| ||||| | |||| Sbjct 29247 AACAGCACGTCTTGCA----CGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATT 29302 Query 213742 CGTGGCCCCAGACCCTGTCC---AGTCCCGGA-CAGGATGCGGGACACATGAGGCTCCAG 213797 | ||||| |||| || || || | || |||||| | || |||| Sbjct 29303 CAGCTCCCCATT---TGTCTTGAAGACCTGGTGCCTCATT-GGGACAAAACAGTGACCAG 29358 Query 213798 TCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAG 213856 || || || | || ||||||| ||||||||| || || |||||||| || ||| || Sbjct 29359 TCTCC-TCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGAAGAG 29417 Query 213857 GTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGAT 213916 || |||| | | ||| ||| || ||| || ||| || | ||| |||||||| Sbjct 29418 ATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGAT 29477 Query 213917 GTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCGCCC---TG 213973 |||||||||||| ||||||| ||||| || || || ||| ||||||||| || || Sbjct 29478 GTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTG 29537 Query 213974 GTCCACC-AGCCTGGCCACCATGT---TGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 || || ||| || | ||| || | | ||||| | || | || ||||||| Sbjct 29538 ATCTACGTAGCGTG----CTGTGTCATTGTACACTCGCAGCATTGGAATGAGACCGTTGG 29593 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCC 214089 || |||||||| ||| || |||||| || || | | ||| || || | Sbjct 29594 ACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAGCACGAATTTTGTGCACACTAAGAC 29653 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGG 214149 | || || |||||| ||| || |||| |||||| | | | || || || || Sbjct 29654 CAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTT 29713 Query 214150 CCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGC 214209 | |||||||| ||| | ||| | | |||||| || || || || | | || || Sbjct 29714 CTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGC 29773 Query 214210 CAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTT-AGAGAGGAGCCTGTAG 214268 ||| |||||||| ||||| ||||||| | | || ||||| ||||| || | || Sbjct 29774 CAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAA-TTGTTGAGAGATAAGATTATAC 29832 Query 214269 GTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATG 214328 ||||||| || | |||||| |||||| | || ||| | ||||| |||| Sbjct 29833 GTCTCCAATACAGCTCTGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATG 29892 Query 214329 TGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGA 214385 || |||||||||| | || | || || |||| || || ||||| |||| Sbjct 29893 TGTTGGGGCCTCTCCACAATTGTGCCGTT---CAATTTGAAGAGATAAGAGCGTTCCAAT 29949 Query 214386 GTCTTGAACCCAAAGTA 214402 |||||||| ||||| || Sbjct 29950 GTCTTGAAGCCAAAATA 29966 >seq96149 Length=6040 Score = 168 bits (186), Expect = 1e-36 Identities = 558/856 (65%), Gaps = 24/856 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||||||||| || ||||| |||| || ||| || | ||||| Sbjct 1758 GTACTCGCCCACCTTCCTCTCAAAGAAATTGGTCTTGCCCTGCAGCGAAATCATTTCCAT 1699 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 | |||||||||||| ||||| || ||| | || | | || || Sbjct 1698 CCAAGGGAAGGGGTTGGCCGTGTTGTAGACCTTGGAGCATCCAAGAGCGACGAGAAGTCT 1639 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || || | || ||||||| ||||||| | | |||||| || |||||| || Sbjct 1638 GTCTGCCACAAATTCAATGTATTGACACATGAGCGCGGCGTTCATTCCAATGAGGCCAAC 1579 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | || | || ||| ||||| || |||| ||| || ||| | || || | Sbjct 1578 AGGAAGCGACTCAGAGACAAATTCCTTTTCAATCTCCACAGCCTCCTTGATGATTTGTGT 1519 Query 48082 AACGCGGGACTCTG-AGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGT 48140 || | | || | || |||| | | || || || || | |||||||||| Sbjct 1518 GG-GCATGTCAGTGGAAGGCCGGTTG---ACGAGCATGCTGTACAGGAGACAGGCAAAGT 1463 Query 48141 CCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGA 48200 | | || | ||| || || | |||||| | | | ||| ||||||||| |||||||||| Sbjct 1462 CGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCAGGCATGA 1403 Query 48201 CCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCA 48260 ||||||| |||||||| || || | ||| ||||||||||||||||| |||| Sbjct 1402 GGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGATGCCTTCCA 1343 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG---AAG---CGTTCTTGTCTGAGATCC 48314 | || ||||| || | ||||| ||||| || | |||| || |||| Sbjct 1342 CGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC---AATCC 1286 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || ||||| || || |||||||||| | |||| || || ||||| ||||| Sbjct 1285 ATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATTGAAGA 1226 Query 48375 GCTTCTTGCACTC-ACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | | ||| || || |||| || ||||| || || | ||||| || Sbjct 1225 GATGATCCTTCTCGACGTG-GTCCTTCACGTAGGTGTCGATCAAGAGGGAATACATTTCC 1167 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || || ||||| || ||||||||| | |||||| | ||| Sbjct 1166 GAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAATCTGA 1107 Query 48494 ACTTCTGTGGAGAATCTCTCCAG-CAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 | ||||| ||| | | |||| || |||||| | || || ||||| || |||||||| Sbjct 1106 ATCTCTGTCATGAAGCGC-CCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGCAGCAAA 1048 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| | ||| |||| ||| || | ||| | || |||| |||| || Sbjct 1047 GAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA---ATG 991 Query 48613 TACGTCTTTG---CCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | | ||||||| || ||||| | ||||||||||| || || ||||| Sbjct 990 GTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTTTTT 931 Query 48670 GTACATGCCCCATATG 48685 |||||| |||| ||| Sbjct 930 GTACATCTCCCAAATG 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930388784568320