Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq97584 163 5e-35 seq96149 161 2e-34 >seq97584 Length=40438 Score = 163 bits (180), Expect = 5e-35 Identities = 533/808 (66%), Gaps = 45/808 (6%) Strand=Plus/Plus Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 ||||| |||| | | |||||||| || || ||||||||||| | || || |||||| Sbjct 28843 GGCATGCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTG 28902 Query 221546 TGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 || | |||||||| | ||||||| || || || |||||||||| || | ||| Sbjct 28903 TGACGTCTGTTGGAGTGCTCGGCTTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTG 28962 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 || | ||| | |||| || || |||||||| ||||||| ||||| || |||| Sbjct 28963 TTCAAGTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAATACCATT 29022 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC---TG--GCCAGGT 221720 | || | | |||||| | |||||| || || || || || | Sbjct 29023 TTC------TCTTTG------TCCACATA----TTTAGG-CAGAGCCATTGAAGCGAGAT 29065 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTAT--ACTGTATGATCTCTGTACAGAGGTTGCT 221778 |||| |||||||| || | | | || | | |||| | || || || || |||||| Sbjct 29066 TACATACGGCCACTTCTT--TGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGA 29123 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGA 221837 || | ||||| || ||||| | ||| || || || || | |||| | |||||||||| Sbjct 29124 ACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTT-CGCGTTGCAGTGATCCTTGTAGA 29182 Query 221838 GCATA-AAGGG--ACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 ||||| ||||| |||| ||||| | || || ||| || ||| || ||| Sbjct 29183 GCATATAAGGGGTACCG---GTCTCTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTT 29239 Query 221895 TGGCGCTCACCGTCC-TCTTG-ACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 || | || | | ||||| || || ||||| || |||| | || || ||| Sbjct 29240 GAGCCTTAACAGCACGTCTTGCACGGC--CCTCGCGCT---CATAGCGTGTGTACAGCTC 29294 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 ||||| | | || | || | || ||||| | |||||| | ||| Sbjct 29295 CTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACAAAACAGTGA 29354 Query 222013 CCAGTG-CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| | | || || || |||| |||||| || || || | |||||| || || | Sbjct 29355 CCAGTCTCCTCCTGCCTCC-ACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGA 29413 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||||||||||| |||||||| ||| ||||| ||| || |||| ||||||||||||| Sbjct 29414 AGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAA 29473 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | ||||| |||||||| ||||||||||||| || | || || | |||| |||| Sbjct 29474 AGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCAC 29533 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 | ||||| | | | | | | | | ||| | | || || | || | || |||||| Sbjct 29534 CTTGATCTA-CGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACCGTTG 29592 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACG 222278 || |||||||||||| | ||||||| Sbjct 29593 GACGTGCCGTTGGTGCCCCTGATGTACG 29620 >seq96149 Length=6040 Score = 161 bits (178), Expect = 2e-34 Identities = 554/860 (64%), Gaps = 36/860 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||| |||||| | ||| |||||| ||||||||| | || ||| Sbjct 916 ATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTCTGGACAGCCGAAGAGGTCGACCTG 975 Query 25537 GC---CAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| || ||| | |||| | || ||| ||| || | ||| Sbjct 976 GCTTCCGATCACA---ACCATTGGAGCTCTCTTACTTCTGATGAGAGGCACTTCATTAAG 1032 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | |||||||| |||||||| ||||||||||| || |||| ||||| || | | | Sbjct 1033 TCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATTGTGACTGAGAACTTGGCTGGGCGC 1092 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || | ||| | | | ||||| || |||||||| || ||||| ||||| Sbjct 1093 TTCATGACAGAGATTCAGATTCCT-GAGGCTCGCTGCTTCTACGGCTTTCAGATTGCCAT 1151 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | ||||| || ||||| || || |||| || ||| | | ||| Sbjct 1152 TGAGAACATTCACTCGGAAATGTATTCC---CTCTTGATCGACACCTACGTGAAGGACCA 1208 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || ||||| |||| || || ||||||||| | || |||||| ||| || Sbjct 1209 CGTCGAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGC 1268 Query 25830 GCGGTGGGCCATGAAGTGGA-TCAACAGCCAGAGCGCT---ACGTTTGGCGAGCGGCTGG 25885 ||||| | || |||| | || || | || || || || ||| | ||| Sbjct 1269 TGATTGGGCTCTCAAATGGATTGAAAAGAGTG-GCACTGACACTTTCCCTGAGAGATTGG 1327 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG----TTCGTTTGCGGCCATCTTC 25941 | || || || || ||||| |||||||| ||| || ||| || ||||||| Sbjct 1328 TTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTT----CCATCTTT 1383 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||||| ||| ||| |||||| || || | ||| ||| ||| | |||||||| Sbjct 1384 TGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGA 1443 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 || ||||| || || | || |||||||| || || |||| | ||||| ||| Sbjct 1444 GATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACA------GCATGCTCGTCAAC 1497 Query 26062 CCTTC-TCAAGAGAC-CGTCTACA-GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 | | || | ||| | | ||| |||||||| |||||||||||||| || ||||| Sbjct 1498 CGGCCTTCCACTGACATGCCCACACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAA 1557 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 ||| | || |||||| | |||||| | ||| Sbjct 1558 TTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAA 1617 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||||||| | |||||| ||| || || | || ||| | ||| |||||| Sbjct 1618 TACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAAC 1677 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 ||| | ||||| ||| | ||||||| || ||| || | || |||||||| |||||| Sbjct 1678 ACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTT 1737 Query 26299 GAAAAGAGGGTCGGCGACTA 26318 || | || ||| ||||| || Sbjct 1738 GAGAGGAAGGTGGGCGAGTA 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927704085701120