Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq97888 86.0 5e-12 seq96095 84.2 2e-11 >seq97888 Length=8055 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || || || ||||| ||| || ||| | || Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | | | |||||||| ||| ||||||||||| | ||| ||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || ||||| || ||||| || | || ||| || |||||||||| || Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| || |||||||| ||| |||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGT 2193 >seq96095 Length=8987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || || ||||| ||| || ||| | || Sbjct 6455 ATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCT 6514 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | ||||| || ||| ||||||||||| | || ||||| Sbjct 6515 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 6574 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || |||||||| || || || | || ||| | || ||||||| || ||| Sbjct 6575 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 6634 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || |||||||| |||||||| ||| |||| Sbjct 6635 ATCCAAAAAGAGTCTACTCTCCACTTGGT 6663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424895421355992