Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq97584 109 7e-19 seq96149 87.8 2e-12 >seq97584 Length=40438 Score = 109 bits (120), Expect = 7e-19 Identities = 369/568 (65%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 75524 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGG 75583 ||| | ||||||||||| || || | || | |||||| ||||| ||| |||||| | || Sbjct 29588 GGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACGCTACGTAGATCAAG-GTGG 29530 Query 75584 CGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGA 75639 | | | ||||| | |||| |||| |||| || ||||| || || ||| | || Sbjct 29529 TGGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGA 29470 Query 75640 GTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTC 75699 ||| | ||| | | ||||| || | |||||| || ||||||||||| | Sbjct 29469 GTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTC-C 29411 Query 75700 ATCC-CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTC 75758 || | |||||| | || || || |||||| || | || |||| || || | ||||| | Sbjct 29410 ATGCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCAGGAGGAGACTGGTCAC 29351 Query 75759 TTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCC 75818 | || ||||| | ||||||||||||| ||| ||| | || ||||| | | Sbjct 29350 TGTTTTGTCCCAATGAGGCACCAGGTCTTCAAGACAAATGGGGAGCTGAATTTGAGGAGC 29291 Query 75819 TCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACTGTACCAGCCGCCGATGTT 75877 | |||||| ||||| ||||| | | ||| || |||| || || || Sbjct 29290 TGTACACACGCTATGAGCGCGAGGGCCGTG-CAAGACGTGCTGTTAAGGCTCAAGAGCTT 29232 Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| || || | || | || | ||||| || || || |||||||| ||||||||| Sbjct 29231 TGGTTTGCCATCTTGGAAGCCCAAATAGAGACCGGTACCCCTTATATGCTCTACAAGGAT 29172 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || ||| ||| ||||| || | | || || || | | || || |||||| Sbjct 29171 CACTGCAACGCGAAATCCAACCACCAGCACCTCGGCACCATTCAATGTTCCAACCTTTGC 29112 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 || |||||| | ||| |||| | || ||| || || ||| | || ||||| Sbjct 29111 ACTGAAATTGTCCAGTTCACATCACCCAAAGAAGTGGCCGTATGTAATCTCGCTTCAATG 29052 Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGA 76085 || || || || ||||| | |||||| Sbjct 29051 GCTCTGCCTAAATATGTGGACAAAGAGA 29024 >seq96149 Length=6040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | ||||| || | | | ||||||| || | ||||| | |||||| |||| Sbjct 1234 GCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAA 1293 Query 65056 ACAAAGTCTCGCT----CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTAT 65111 | | ||| | || | ||| | ||| | | |||| || || ||||| || || Sbjct 1294 A-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCAT 1352 Query 65112 CTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||||||||| || ||||| | || | |||| | |||||| |||| |||||||| || Sbjct 1353 CTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGG 1412 Query 65172 CCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||| |||||| ||||| | || | |||||||||| || || || |||||| Sbjct 1413 CCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCC 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595836952874240