Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq93742 109 1e-18 seq85083 109 1e-18 seq84820 109 1e-18 seq96095 95.1 2e-14 seq96763 87.8 3e-12 seq96238 84.2 4e-11 seq95614 84.2 4e-11 seq95329 84.2 4e-11 >seq93742 Length=2862 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| ||||| ||||| || | || | |||||| || || |||||| Sbjct 533 ATACCACCCCTCAGACGAAGCACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCG 592 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || ||||| || | | ||| ||||||||| Sbjct 593 GCCAAGGTACGGCCATCTTCTAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGA 652 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || |||| || ||||| ||| || ||||| Sbjct 653 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTTACGTTCTCAATAGAATCAGAGGACTCC 712 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || || || || ||||| Sbjct 713 ACTTCAAGGGTAATAGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 762 >seq85083 Length=2832 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| ||||| ||||| || | || | |||||| || || |||||| Sbjct 503 ATACCACCCCTCAGACGAAGCACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCG 562 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || ||||| || | | ||| ||||||||| Sbjct 563 GCCAAGGTACGGCCATCTTCTAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGA 622 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || |||| || ||||| ||| || ||||| Sbjct 623 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTTACGTTCTCAATAGAATCAGAGGACTCC 682 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || || || || ||||| Sbjct 683 ACTTCAAGGGTAATAGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 732 >seq84820 Length=3640 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| ||||| ||||| || | || | |||||| || || |||||| Sbjct 3535 ATACCACCCCTCAGACGAAGCACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCG 3476 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || ||||| || | | ||| ||||||||| Sbjct 3475 GCCAAGGTACGGCCATCTTCTAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGA 3416 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || |||| || ||||| ||| || ||||| Sbjct 3415 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTTACGTTCTCAATAGAATCAGAGGACTCC 3356 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || || || || ||||| Sbjct 3355 ACTTCAAGGGTAATAGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 3306 >seq96095 Length=8987 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | ||||| |||| || | |||| ||| || || || |||||| Sbjct 6912 ATACCACCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCG 6853 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | || || | ||||| || ||||| || | | ||| ||||||||| Sbjct 6852 GCGAGCGTGCGGCCGTCCTCAAGCTGTTTACCTGCAAAGATGAGACGCTGCTGATCAGGA 6793 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || ||| | ||| || | || |||||||| Sbjct 6792 GGGATGCCCTCCTTGTCTTGAATCTTCTGTTTCACATTCTCGATGCTGTCAGAAGACTCC 6733 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || || || || || || ||||||||||| || ||||| Sbjct 6732 ACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTTTTTACAAAGATCTGCAT 6683 >seq96763 Length=8027 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | ||||| |||| || | |||| ||| || || || |||||| Sbjct 1635 ATGCCACCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 1576 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | || || | || || || ||||| || | | ||| ||||||||| Sbjct 1575 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGA 1516 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || ||| | ||| ||| | ||| || ||||| Sbjct 1515 GGGATGCCCTCCTTGTCCTGGATCTTCTGTTTCACATTCTCAATGGAATCAGAGGACTCC 1456 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || |||||||| || || || || ||||| || || ||||| || Sbjct 1455 ACTTCGAGGGTAATAGTTTTGCCGGTCAGAGTCTTTACGAAGATCTGCATGTT 1403 >seq96238 Length=7505 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || || | ||| |||||||| || || ||||| || || || || Sbjct 7390 TGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATC 7331 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| ||| ||| | ||| || ||||||||||| ||||| || || || || Sbjct 7330 TTCTGCTTTACATTCTCAATGGAATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCA 7271 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 7270 GTAAGAGTCTTCACAAAGATCTGCAT 7245 >seq95614 Length=2048 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || || | ||| |||||||| || || ||||| || || || || Sbjct 576 TGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATC 517 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| ||| ||| | ||| || ||||||||||| ||||| || || || || Sbjct 516 TTCTGCTTTACATTCTCAATGGAATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCA 457 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 456 GTAAGAGTCTTCACAAAGATCTGCAT 431 >seq95329 Length=2102 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || || | ||| |||||||| || || ||||| || || || || Sbjct 1527 TGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATC 1586 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| ||| ||| | ||| || ||||||||||| ||||| || || || || Sbjct 1587 TTCTGCTTTACATTCTCAATGGAATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCA 1646 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 1647 GTAAGAGTCTTCACAAAGATCTGCAT 1672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898549534431360