Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq97583 113 9e-20 seq85724 113 9e-20 seq96238 105 1e-17 seq96095 105 1e-17 seq95614 105 1e-17 seq95329 105 1e-17 seq96763 96.9 7e-15 seq93431 96.9 7e-15 >seq97583 Length=3224 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || | || || || | ||| | ||| || ||| || || || Sbjct 3221 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 3162 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||| || || ||||| ||||| || | || ||||||||| Sbjct 3161 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 3102 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || | || || || |||||||| || || ||| Sbjct 3101 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 3042 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| ||||| ||||| || | ||| |||||||| Sbjct 3041 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 2992 >seq85724 Length=578 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || | || || || | ||| | ||| || ||| || || || Sbjct 4 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 63 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||| || || ||||| ||||| || | || ||||||||| Sbjct 64 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 123 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || | || || || |||||||| || || ||| Sbjct 124 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 183 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| ||||| ||||| || | ||| |||||||| Sbjct 184 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq96238 Length=7505 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | || || || |||||||| || | Sbjct 7427 GATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAAACG 7368 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || || || || || | |||||||| || || Sbjct 7367 CTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGA 7308 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 7307 ATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTG 7248 Query 192534 CAT 192536 ||| Sbjct 7247 CAT 7245 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || ||||| || | || || || | ||||| ||| || ||| || || || Sbjct 6790 ATACCTCCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 6731 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || |||||||||||||| | | ||| || ||||| Sbjct 6730 GCGAGGGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 6671 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| || | |||||||| || || || ||||| Sbjct 6670 GGAATGCCTTCCTTGTCCTGTATCTTCTGCTTTACATTCTCGATGCTGTCAGAGGATTCG 6611 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| || || | || || | || |||||||| Sbjct 6610 ACCTCAAGGGTAATGGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGCAT 6561 >seq96095 Length=8987 Score = 105 bits (116), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || ||||| | ||||| ||| || |||||| || || Sbjct 7609 ATGCCACCCCTTAGGCGAAGCACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCG 7550 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || ||||| || || || |||||||| | | ||| ||||||||| Sbjct 7549 GCCAAGGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGT 7490 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC-GA--- 192482 || || || || |||||||| || || | || || ||| | || ||| | || Sbjct 7489 GGGATGCCCTCCTTATCTTGAATCTTTTGCTTGAC----GTTCTCGATGCTGTCAGAGCT 7434 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||| | ||| ||||| || ||||| || ||||| | ||| |||||||| Sbjct 7433 TTCCACTTCCAAAGTGATGGTCTTGCCAGTCAAAGTTTTTACAAAGATCTGCAT 7380 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||||| |||||| ||| || || || | || || || |||| || Sbjct 6663 ACCAAGTGGAGAGTAGACTCTTTTTGGATGTTGTAGTCGGCCAAGGTACGACCATCCTCG 6604 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || |||||||||||||| | | ||| |||||||| || || || ||||| || || Sbjct 6603 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCTTTGTCCTGG 6544 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || | || || || ||||| || || || || || || | || ||||| || Sbjct 6543 ATCTTCTGCTTCACGTTCTCAATAGAGTCAGAGGACTCCACCTCCAAGGTGATGGTCTTG 6484 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || | ||| || ||||| Sbjct 6483 CCAGTCAATGTCTTCACAAAGATTTGCAT 6455 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || || || ||||| || | | ||| ||||||||||| || ||||| |||||||| || Sbjct 5904 TGCTTGCCTGCAAAAATGAGACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATC 5845 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || | || || || ||||| || || ||||| ||||| | ||| ||||| || ||| Sbjct 5844 TTCTGCTTCACGTTCTCGATAGAGTCAGAGGATTCGACTTCCAAAGTGATGGTCTTTCCA 5785 Query 192511 GTTAATGTTTTAATAAATATCTGCATTTTA 192540 || ||||| || | || || |||||| || Sbjct 5784 GTCAATGTCTTGACGAAGATTTGCATTGTA 5755 >seq95614 Length=2048 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | || || || |||||||| || | Sbjct 613 GATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAAACG 554 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || || || || || | |||||||| || || Sbjct 553 CTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGA 494 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 493 ATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTG 434 Query 192534 CAT 192536 ||| Sbjct 433 CAT 431 >seq95329 Length=2102 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | || || || |||||||| || | Sbjct 1490 GATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAAACG 1549 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || || || || || | |||||||| || || Sbjct 1550 CTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGA 1609 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 1610 ATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTG 1669 Query 192534 CAT 192536 ||| Sbjct 1670 CAT 1672 >seq96763 Length=8027 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| ||||| || | || || || | ||||| ||| || ||| || || || Sbjct 1635 ATGCCACCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 1576 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || |||||||||||||| | | ||| |||||||| Sbjct 1575 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGA 1516 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || | ||| ||||| || ||||| || || || Sbjct 1515 GGGATGCCCTCCTTGTCCTGGATCTTCTGTTTCACATTCTCAATGGAATCAGAGGACTCC 1456 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || ||||| ||||| || || | || || | || |||||||| || Sbjct 1455 ACTTCGAGGGTAATAGTTTTGCCGGTCAGAGTCTTTACGAAGATCTGCATGTT 1403 >seq93431 Length=4049 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| |||| || | || | |||| || || ||| || || || Sbjct 3747 ATGCCACCTCTAAGGCGTAGAACGAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 3688 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | || || ||||| ||||| || | ||| ||||| || Sbjct 3687 GCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGA 3628 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || | || || || ||||| || || ||||| Sbjct 3627 GGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCAGAGGATTCG 3568 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || |||||||| | || || | || ||||||||| Sbjct 3567 ACTTCCAGAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCATT 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983240734114800