Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq95571 96.9 6e-15 seq97888 95.1 2e-14 seq97583 95.1 2e-14 seq96238 95.1 2e-14 seq85724 95.1 2e-14 seq93431 87.8 3e-12 >seq95571 Length=1702 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | ||| ||||| | ||||| ||| || |||||| || || Sbjct 68 ATGCCACCCCTAAGGCGAAGTACCAAATGGAGAGTAGACTCCTTTTGAATATTGTAGTCG 127 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || || || || || || | | |||||||||||| Sbjct 128 GCCAAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCAGGA 187 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || | ||| ||||| || | ||| || || || Sbjct 188 GGGATGCCCTCCTTGTCCTGGATCTTCTGTTTCACATTCTCAATGGAATCAGAGGACTCC 247 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || ||||| ||||| || || | || || | ||| |||||||| || Sbjct 248 ACTTCGAGGGTAATAGTTTTGCCGGTCAGAGTCTTTACGAAGATCTGCATGTT 300 >seq97888 Length=8055 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || ||||| | ||||| |||||| |||||| || || Sbjct 1758 ATGCCACCCCTAAGGCGAAGCACCAAATGGAGAGTAGACTCTTTTTGAATATTGTAGTCG 1699 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | ||| |||||||| || || | | |||||||||||| Sbjct 1698 GCCAAGGTACGACCGTCCTCGAGTTGCTTACCAGCGAAGATGAGGCGCTGTTGGTCAGGG 1639 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || | || || || || | || || || Sbjct 1638 GGGATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATGCTGTCAGAGCTCTCC 1579 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| || || ||||| || || || | || |||||||| Sbjct 1578 ACTTCAAGGGTAATAGTCTTGCCAGTCAACGTCTTCACAAAGATCTGCAT 1529 >seq97583 Length=3224 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | ||| | ||| || || || || || Sbjct 3221 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 3162 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| |||| || || ||||| || || || | || || |||||| Sbjct 3161 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 3102 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || | || || || |||| ||| || || ||| Sbjct 3101 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 3042 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| ||||| ||||| || | || |||||||| Sbjct 3041 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 2992 >seq96238 Length=7505 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || ||||| || | || || || | ||||| ||| || || || || || Sbjct 6790 ATACCTCCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 6731 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || ||||||||||| || | | ||| |||||||| Sbjct 6730 GCGAGGGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 6671 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || ||||| || | |||||||| || | || || ||||| Sbjct 6670 GGAATGCCTTCCTTGTCCTGTATCTTCTGCTTTACATTCTCGATGCTGTCAGAGGATTCG 6611 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| || || | || || | ||| |||||||| Sbjct 6610 ACCTCAAGGGTAATGGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGCAT 6561 >seq85724 Length=578 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | ||| | ||| || || || || || Sbjct 4 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 63 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| |||| || || ||||| || || || | || || |||||| Sbjct 64 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 123 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || | || || || |||| ||| || || ||| Sbjct 124 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 183 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| ||||| ||||| || | || |||||||| Sbjct 184 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq93431 Length=4049 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| |||| || | || | |||| || || || || || || Sbjct 3747 ATGCCACCTCTAAGGCGTAGAACGAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 3688 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| || | || || ||||| || || || | ||| || || || Sbjct 3687 GCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGA 3628 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || | || || || |||| || || ||||| Sbjct 3627 GGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCAGAGGATTCG 3568 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| || |||||||| | || || | ||| ||||||||| Sbjct 3567 ACTTCCAGAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCATT 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904024402478400