Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq96095 100 2e-16 seq97888 98.7 8e-16 seq96763 91.5 1e-13 seq97451 87.8 1e-12 seq93431 87.8 1e-12 seq89129 87.8 1e-12 seq97583 86.0 5e-12 seq95571 86.0 5e-12 seq85724 86.0 5e-12 >seq96095 Length=8987 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | || ||||| ||||| || | ||| |||| || Sbjct 6683 ATGCAGATCTTTGTAAAAACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCTTCT 6742 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | ||| | || |||||||||||| ||||| || ||| | || ||||| Sbjct 6743 GACAGCATCGAGAATGTGAAACAGAAGATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 6802 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||||||||| ||||| | | | || | || || |||||| Sbjct 6803 CAGCGTCTCATCTTTGCAGGTAAACAGCTTGAGGACGGCCGCACGCTCGCCGACTACAAC 6862 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 6863 ATCCAAAAGGAGTCTACTCTTCACTTGGTG 6892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || || || ||||| || |||||| | ||| |||| Sbjct 5987 ATGCAAATCTTCGTGAAGACATTGACTGGCAAGACTATTACCCTTGAAGTGGAGAGCTCT 6046 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || |||||||| ||||| || ||| | || || || Sbjct 6047 GATTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 6106 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| ||||||||||||||||| | | | || |||| || |||||| Sbjct 6107 CAACGTCTGATCTTTGCAGGTAAACAGCTGGAGGACGGCCGCACTTTGGCTGACTACAAC 6166 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| ||||| | | ||| |||| || Sbjct 6167 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTTCGCCTGAGAGGCGG 6213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 110268 TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAG 110326 ||| ||||||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 5754 TTACAATGCAAATCTTCGTCAAGACATTGACTGGAAAGACCATCACTTTGGAAGTCGAAT 5813 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||| || || ||| | || || |||||||| || || |||||| | || Sbjct 5814 CCTCT-GACTCTATCGAGAACGTGAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCT 5872 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || | || |||| ||| || || ||||| ||||| | | | || | || || Sbjct 5873 GATCAGCAGCGTCTCATTTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGAC 5932 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| ||||| || | ||| |||| Sbjct 5933 TACAACATTCAAAAGGAATCCACCCTCCACTTGGT 5967 >seq97888 Length=8055 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || ||| | ||||||||||| |||||| ||||| |||| | Sbjct 1298 AACATGCAGATCTTCGTAAAGACTCTGACCGGCAAAACTATTACCCTCGAAGTGGAGTCC 1357 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | ||| | || || |||||||| ||||| || ||| | ||| || Sbjct 1358 TCTGATTCCATCGAGAATGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 1417 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | || || | || ||||| || || ||||||| | | || |||| || ||| Sbjct 1418 CAACAGCGCCTCATCTTCGCTGGTAAGCAACTCGAGGATGGCCGCACCTTGGCTGACTAC 1477 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| ||||| || | ||| |||| Sbjct 1478 AACATCCAAAAGGAATCCACCCTCCACTTGGT 1509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || ||||| || ||||| || ||||| ||||| ||| | || || | ||| Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| | | | | ||||| || ||||| |||||||| ||| | ||| |||| Sbjct 2044 T-GATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATC 2102 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || | || || | || || || ||||| ||||||| | | || |||| ||||||| Sbjct 2103 AGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACA 2162 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||||| || ||||| | ||| ||||| Sbjct 2163 ACATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 >seq96763 Length=8027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || ||| | ||||||||||| |||||| ||||| |||| | Sbjct 1403 AACATGCAGATCTTCGTAAAGACTCTGACCGGCAAAACTATTACCCTCGAAGTGGAGTCC 1462 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | | | | || ||||||||||| ||||| || ||| | || ||| Sbjct 1463 TCTGATTCCATTGAGAATGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGAT 1522 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| ||||| ||||| ||||| | | | || | || || ||| Sbjct 1523 CAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTCGCCGACTAC 1582 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || ||||| | ||| ||||| Sbjct 1583 AACATCCAGAAGGAGTCTACTCTTCACTTGGTG 1615 >seq97451 Length=8672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||| || Sbjct 8571 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 8512 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || ||||||||| ||||| |||||| | ||| ||||| Sbjct 8511 GATAGTATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCAG 8452 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||| ||||| | | || || || |||||||| Sbjct 8451 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGTACTCTGCCG-ATTACAAC 8393 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 8392 ATCCAAAAGGAGTCTACCCTTCACTTGGTG 8363 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || || |||||||| ||||| ||| ||||| ||| || Sbjct 7819 ATGCAGATCTTCGTTAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCTTCT 7760 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | ||| | || ||||||||||| ||||| || ||| | || ||||| Sbjct 7759 GATAGTATCGAGAATGTGAAACAGAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 7700 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || || ||||| ||||| | | || | || || |||||| Sbjct 7699 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACTCTTGCCGACTACAAC 7640 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 7639 ATCCAAAAGGAGTCTACCCTCCACTTGGTG 7610 >seq93431 Length=4049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||| || Sbjct 3746 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 3805 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || ||||||||| ||||| |||||| | ||| ||||| Sbjct 3806 GATAGTATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCAG 3865 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||| ||||| | | || || || |||||||| Sbjct 3866 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGTACTCTGCCG-ATTACAAC 3924 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 3925 ATCCAAAAGGAGTCTACCCTTCACTTGGTG 3954 >seq89129 Length=1308 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||| || Sbjct 304 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 245 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || ||||||||| ||||| |||||| | ||| ||||| Sbjct 244 GATAGTATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCAG 185 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||| ||||| | | || || || |||||||| Sbjct 184 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGTACTCTGCCG-ATTACAAC 126 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 125 ATCCAAAAGGAGTCTACCCTTCACTTGGTG 96 >seq97583 Length=3224 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||||||||||||| | || ||| | Sbjct 2992 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACCCTTGAGGTAGAGTCCTCT 3051 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || ||||||||| |||||||| || | || ||||| Sbjct 3052 GATTCTATTGAGAACGTCAAGCAGAAGATTCAAGACAAAGAGGGTATTCCACCTGATCAG 3111 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||||||||||| | | | || ||||||| |||||| Sbjct 3112 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGGCGGACTACAAC 3171 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| |||| | | ||| |||| || Sbjct 3172 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTGCGCCTGAGAGGAGG 3218 >seq95571 Length=1702 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || ||| | ||||||||||| |||||| ||||| |||| | Sbjct 300 AACATGCAGATCTTCGTAAAGACTCTGACCGGCAAAACTATTACCCTCGAAGTGGAGTCC 241 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | | | | || ||||||||||| ||||| || ||| | || || Sbjct 240 TCTGATTCCATTGAGAATGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGAC 181 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | || || | || || || ||||| ||||||| | || |||| || ||| Sbjct 180 CAACAGCGCCTCATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGACTAC 121 Query 110450 AACATTCAAAAAGAATCTAC 110469 || |||||||| || ||||| Sbjct 120 AATATTCAAAAGGAGTCTAC 101 >seq85724 Length=578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||||||||||||| | || ||| | Sbjct 233 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACCCTTGAGGTAGAGTCCTCT 174 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || ||||||||| |||||||| || | || ||||| Sbjct 173 GATTCTATTGAGAACGTCAAGCAGAAGATTCAAGACAAAGAGGGTATTCCACCTGATCAG 114 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||||||||||| | | | || ||||||| |||||| Sbjct 113 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGGCGGACTACAAC 54 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| |||| | | ||| |||| || Sbjct 53 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTGCGCCTGAGAGGAGG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412347264500264