Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq93742 87.8 2e-12 seq85083 87.8 2e-12 seq84820 87.8 2e-12 seq96325 84.2 2e-11 >seq93742 Length=2862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 25170 ACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||| ||||| | || || || ||| | || ||||| | || || | || |||||| Sbjct 996 ACAACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAA 937 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||| ||| | || || ||||| || || || || || || || || Sbjct 936 TCCTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCT 877 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || ||||| |||| | | | | | ||| Sbjct 876 GATCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGAC 817 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || || ||| | || || || | | ||||| ||||| Sbjct 816 TACAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 764 >seq85083 Length=2832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 25170 ACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||| ||||| | || || || ||| | || ||||| | || || | || |||||| Sbjct 966 ACAACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAA 907 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||| ||| | || || ||||| || || || || || || || || Sbjct 906 TCCTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCT 847 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || ||||| |||| | | | | | ||| Sbjct 846 GATCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGAC 787 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || || ||| | || || || | | ||||| ||||| Sbjct 786 TACAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 734 >seq84820 Length=3640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 25170 ACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||| ||||| | || || || ||| | || ||||| | || || | || |||||| Sbjct 3072 ACAACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAA 3131 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||| ||| | || || ||||| || || || || || || || || Sbjct 3132 TCCTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCT 3191 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || ||||| |||| | | | | | ||| Sbjct 3192 GATCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGAC 3251 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || || ||| | || || || | | ||||| ||||| Sbjct 3252 TACAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 3304 >seq96325 Length=5355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 ||||| || |||||||||||||| ||||||| | ||||| || || ||||||| | | Sbjct 3854 GGTATTCCTCCCGATCAGCAAAGGCTCATTTTTGCGGGCAAGCAGCTAGAAGATGGTCGT 3795 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | ||| ||||| || |||||||| ||||| | ||| | ||| | || |||||| Sbjct 3794 ACGCTTGCCGACTACAACATCCAAAAAGAGTCCACGCTCCATCTTGTGCTCAGGTTGAGA 3735 Query 25397 GGAGGA 25402 || ||| Sbjct 3734 GGCGGA 3729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444547779567360