Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq96095 98.7 8e-16 seq93742 96.9 3e-15 seq85083 96.9 3e-15 seq84820 96.9 3e-15 seq97888 91.5 1e-13 seq87755 89.7 4e-13 >seq96095 Length=8987 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || |||||||||||||||||||| ||| |||| || || Sbjct 6455 ATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCT 6514 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | ||||| || || || |||||||| ||| | || |||||| Sbjct 6515 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 6574 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| || || || | || ||| | || ||| ||| |||||| Sbjct 6575 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 6634 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||| ||||| || || || || Sbjct 6635 ATCCAAAAAGAGTCTACTCTCCACTTGGT 6663 >seq93742 Length=2862 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||| || || || ||| ||||||| |||||||||||| | || ||| | Sbjct 994 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 935 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || || ||||| || ||||| |||||| | ||| ||| Sbjct 934 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 875 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | || || | ||| ||||| || | || ||| | ||| ||| ||| || Sbjct 874 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 815 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || ||||| || || || || Sbjct 814 CAATATTCAAAAGGAGTCTACCCTCCACTTGGT 782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| ||||||||||||| |||||| | ||| || || Sbjct 762 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 703 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || || || ||| ||||| |||||| | || |||||| Sbjct 702 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 643 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || |||||||| || ||| ||| |||||| Sbjct 642 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 583 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||| || || || || Sbjct 582 ATCCAAAAAGAGTCCACCCTTCA 560 >seq85083 Length=2832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||| || || || ||| ||||||| |||||||||||| | || ||| | Sbjct 964 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 905 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || || ||||| || ||||| |||||| | ||| ||| Sbjct 904 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 845 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | || || | ||| ||||| || | || ||| | ||| ||| ||| || Sbjct 844 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 785 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || ||||| || || || || Sbjct 784 CAATATTCAAAAGGAGTCTACCCTCCACTTGGT 752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| ||||||||||||| |||||| | ||| || || Sbjct 732 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 673 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || || || ||| ||||| |||||| | || |||||| Sbjct 672 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 613 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || |||||||| || ||| ||| |||||| Sbjct 612 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 553 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||| || || || || Sbjct 552 ATCCAAAAAGAGTCCACCCTTCA 530 >seq84820 Length=3640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||| || || || ||| ||||||| |||||||||||| | || ||| | Sbjct 3074 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 3133 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || || ||||| || ||||| |||||| | ||| ||| Sbjct 3134 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 3193 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | || || | ||| ||||| || | || ||| | ||| ||| ||| || Sbjct 3194 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 3253 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || ||||| || || || || Sbjct 3254 CAATATTCAAAAGGAGTCTACCCTCCACTTGGT 3286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| ||||||||||||| |||||| | ||| || || Sbjct 3306 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 3365 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || || || ||| ||||| |||||| | || |||||| Sbjct 3366 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 3425 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || |||||||| || ||| ||| |||||| Sbjct 3426 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 3485 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||| || || || || Sbjct 3486 ATCCAAAAAGAGTCCACCCTTCA 3508 >seq97888 Length=8055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || ||||||||||||||||| ||| | || ||| || Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||||| ||| | || || ||||| || |||||||| ||| | ||| |||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | || || | || ||||| || | || ||| || ||| ||||||||| Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| ||||| || ||||| || || || || Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGT 2193 >seq87755 Length=4968 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 106275 AAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAA 106334 ||||| ||||||||||||||||| ||| ||||| || || || ||| | | | Sbjct 4967 AAAACTTTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCTGACTCTATCGAGAAC 4908 Query 106335 GTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTAT 106394 || || || || ||| ||||| |||||| | ||| ||| || || | || || | | Sbjct 4907 GTTAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTCATCTTT 4848 Query 106395 GCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCT 106454 || ||||| || | || || | ||| ||| ||| |||||||| ||||| || || Sbjct 4847 GCAGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCCGACTACAACATCCAAAAGGAGTCC 4788 Query 106455 ACACTACATTTAGTATTGAGGTTACGAGGAGGATAAT 106491 || || || || || | ||||| || |||||| ||| Sbjct 4787 ACCCTTCACTTGGTGCTCAGGTTGCGTGGAGGACAAT 4751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401847851542784