Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq96149 255 8e-63 seq97584 178 2e-39 seq86817 102 1e-16 >seq96149 Length=6040 Score = 255 bits (282), Expect = 8e-63 Identities = 419/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 1472 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 1413 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAA 39735 |||||||| || || | ||| ||||||||||| |||| | || ||| | ||||| ||||| Sbjct 1412 CCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTTCCAGAGAAGAA 1354 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT---GTATCATTATG 39792 ||||||||| || || || |||||||| | |||||| | || | || || | | Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 39793 T---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| || | |||||||||||||||||||| ||| |||||| || || || || Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||| ||||||| || || || | || || || || || || || || || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || ||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||| || | ||||| || | | ||||| || ||| |||| || |||||| || Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||| || ||||| ||| ||||| || | | ||||| | || | |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 | ||| ||| | | || || ||||| |||||||| || || ||||| ||||| Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||||||||| | ||| || | || | || ||||| | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 >seq97584 Length=40438 Score = 178 bits (196), Expect = 2e-39 Identities = 474/717 (66%), Gaps = 8/717 (1%) Strand=Plus/Plus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 ||||| |||| || ||| || |||||| ||||||| || | | || || Sbjct 29275 TCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCC 29334 Query 69556 TCATTTGGACACATCAATGACCACACATCATCAT-CCTTAACTCGTTTCATAAATAGATC 69614 ||||| ||||| | || |||||| | || || | ||| |||| | ||| || ||||| Sbjct 29335 TCATTGGGACAAAACAGTGACCAGTC-TCCTCCTGCCTCCACTCTCTCCATGAACAGATC 29393 Query 69615 GGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttt 69674 ||| | ||| ||||| ||||||||||||| || | ||||| || || || || Sbjct 29394 GGGTACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 29453 Query 69675 tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGAC 69734 ||| || || | |||||| | || || | ||||| || || ||||| || || | | Sbjct 29454 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGC 29513 Query 69735 TCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAG 69794 |||| | || || || ||||||| ||| | || |||| ||| || |||| ||| Sbjct 29514 TCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAG 29573 Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCG 69852 ||| ||||| | ||| || || | || || || || || || | || || Sbjct 29574 CATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCA--GCA 29631 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 ||||| || | | ||||| |||||||| || | ||||| || | || || || Sbjct 29632 CGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGT 29691 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || | ||||| ||||| || |||||||| || ||| |||||||| || || || | Sbjct 29692 TTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAA 29751 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | ||| | || || || ||||| || | ||| |||| || |||||||| || Sbjct 29752 GAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAAT 29811 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTC-AATAGCTGATTCTATATCCCACTGATGAATTCC 70091 | || ||| | ||||| || || || |||| | | | || || || || | ||| Sbjct 29812 TGTTGAGAGATAAGATTATACGTCTCCAATA-CAGCTCTGATGTCAGTCTTGTGCAGTCC 29870 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 || || || ||||||||||| || || || | || || || | || | ||| || Sbjct 29871 TACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCAATTTGAA 29930 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 || || || ||||| || || || |||||||| ||| | | ||||||||||| Sbjct 29931 GAGATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAAGTCTCTTTC 29987 >seq86817 Length=155676 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||| || | ||| || |||||||||||||| || || ||||| || | ||||| || Sbjct 53884 GGCAAATTTACAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCC 53943 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGA 39737 |||||| | || ||||| |||| |||| | |||||| || ||| |||||||||||||| Sbjct 53944 AGGCATGATGCCTCGCTTCTTGATCCAATAAATGGCA-CAGAAGCTTCCAGAAAAGAAGA 54002 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAG 39765 |||| || || || ||||| || || || Sbjct 54003 TGCCCTCGACGGCAGCAAAGGCCACCAG 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686065207302720