Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq96149 138 9e-28 >seq96149 Length=6040 Score = 138 bits (152), Expect = 9e-28 Identities = 388/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| || | || || ||| ||| | ||||||||||| || |||| Sbjct 886 TTTGTGCTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCC 945 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGCATT 43818 || || |||||||| ||||| || || || || || | | || |||||| | | Sbjct 946 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGA-TCACAACCATTGGAGCTCTCT 1004 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | | || | || || || | || ||||| || |||||||| || || Sbjct 1005 TACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGG 1064 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || | ||| || |||| | | || || | ||| |||| | || || || || Sbjct 1065 CATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGCTCG 1124 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || || || || ||||| |||||||| || || ||||| ||||||||||| || | Sbjct 1125 CTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTT 1184 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 ||| || || ||| | || || ||||||| ||| | || ||||| || || || Sbjct 1185 GATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGATAC 1244 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAA----TTCAAA 44112 || ||| | | || | ||||| || ||||| || |||||||| ||| | | Sbjct 1245 TGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCAC 1304 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 ||| |||| || || | || || || || | ||||||||||| ||||| || || Sbjct 1305 TGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGG 1364 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 | || |||| |||||| | ||||| | || | |||||||| | | ||| Sbjct 1365 AAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTC 1422 Query 44233 A--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | |||||||| || || | ||||| ||| | |||||||| ||||| || Sbjct 1423 AGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTG 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396980087179240