Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq97584 205 1e-47 >seq97584 Length=40438 Score = 205 bits (226), Expect = 1e-47 Identities = 913/1427 (64%), Gaps = 27/1427 (2%) Strand=Plus/Plus Query 118154 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 ||| || || || | | |||| || |||||||| | ||||| |||||||||||||| Sbjct 28494 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 28553 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||| || | || |||| || || || || ||||| ||||| | || | |||||| Sbjct 28554 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 28613 Query 118274 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT 118333 || ||||| | ||| ||||| | ||||||| | | |||| || | | || Sbjct 28614 GCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGATGG 28673 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 ||| | | ||||||||||||||| || || |||| | || ||| || || ||||||| Sbjct 28674 CTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAATGT 28733 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453 || || || | ||| |||| ||| | | ||| || || ||| || Sbjct 28734 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTGAGAGCGGCAAAATAGAT 28793 Query 118454 TGTTTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC 118512 ||| || |||||| || | || | || ||||| ||| || | | | || Sbjct 28794 TGTCTCGAAAATGTCGCG-GTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA 28852 Query 118513 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 118572 | | || || || || || ||||| || || || |||||||| || | || | | | Sbjct 28853 AGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGT 28912 Query 118573 TAGACTTCCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 | || | | || ||| | || || || | || || || ||| | || | || Sbjct 28913 TGGAGTGCTCGGC-TTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTTG 28971 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCTT 118689 ||||| ||||| | ||| ||||| |||| |||||| | | | |||||| Sbjct 28972 CGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAA--TACCATTTTCTCTT 29029 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT-- 118747 | ||||| ||||| || || ||||| || |||||||| || || | | || || Sbjct 29030 TGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATAC---GGCCACTTCTTTGG 29086 Query 118748 ATCA-GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCT 118806 | | ||| ||| | |||||| ||||| | ||| |||| | ||||||||| | || || Sbjct 29087 GTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCT 29146 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 || || || || | ||| || ||||||||| ||||| || || || || ||||| Sbjct 29147 GGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTA 29206 Query 118867 TTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGT-TGGCTCGC 118925 |||||| | | || || ||| | || ||| |||| ||| | || || Sbjct 29207 TTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAG-CACGTCTTGCACGG 29265 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| ||| || |||||| || | ||||| || | ||| ||| || Sbjct 29266 CCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGA 29325 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 |||||||||| || || || || || ||||| | || || |||| || | || |||| Sbjct 29326 CCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATG 29385 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCC 119103 || || || || | ||| || || ||||||||| | || ||| ||||| | | Sbjct 29386 AACAGATCGGGTACCCACAGAGCATGGAAGAGATCTC--TGGCTCGCTGCTCTTCCTTGC 29443 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || ||||||||| || | ||| ||||||||||| || ||||| || | Sbjct 29444 CGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGA 29503 Query 119164 CCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 |||| || ||||| | | |||| | || | ||| || | || ||| | || Sbjct 29504 TTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGT 29563 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGA 119278 | || || ||||||||||||| ||| | ||| ||| || || |||| || |||||| Sbjct 29564 ACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAG- 29622 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 || || | | | ||| | | |||||| || || || | ||| || || Sbjct 29623 -TTGGCAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAA 29681 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 ||||||| | || || |||| ||||| || || ||| | | | | ||| Sbjct 29682 GGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAG 29741 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 |||||| || | ||| || | || || ||||| ||||| || || || || || || Sbjct 29742 GAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATG 29801 Query 119459 GATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 |||| | ||| || || | || |||||||| || || ||||| | Sbjct 29802 AGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTCTGATGTCAGTCTT 29861 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 ||| | || | | || ||||| ||||||| |||||| | |||| Sbjct 29862 GTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCA 29908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617675699730880