Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq97584 147 2e-30 seq96149 102 9e-17 seq86817 91.5 2e-13 >seq97584 Length=40438 Score = 147 bits (162), Expect = 2e-30 Identities = 332/489 (68%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 79356 CCAGTCCTCGTCCTTC-TCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 |||||| || |||| | || || |||||||||| || || || | |||||| || || Sbjct 29355 CCAGTC-TCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGA 29413 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 |||| || | | ||| ||| || | ||| |||||| |||||| | ||| || | Sbjct 29414 AGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAA 29473 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 |||||| |||||||| |||||||||||||| ||||| | ||||| | |||||| || | Sbjct 29474 AGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCAC 29533 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 | || | ||||| || || |||| ||| | ||||| ||||| || | || |||| || Sbjct 29534 CTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACCGTTGG 29593 Query 79595 CGACGCCGTTCGTCCCGTTGA--TTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGA 79651 |||||| || || ||| | || || | || ||||| || | ||| | Sbjct 29594 ACGTGCCGTTGGTGCCCCTGATGTACGAGT--TGGCAGCACGAAT-TTTGTGCACACTAA 29650 Query 79652 TTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGC 79711 || || || |||| | ||| || || ||||||| || ||||| ||||| || | Sbjct 29651 GACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCC 29710 Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT-TC 79770 | || || ||| || | ||| || |||||||| || | ||| ||| || | Sbjct 29711 CTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGT-GGTCGTGGC 29769 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCG 79830 || || || ||||| || || || || || || ||||| || | ||| || |||| Sbjct 29770 GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTA 29829 Query 79831 TACGTCTCC 79839 ||||||||| Sbjct 29830 TACGTCTCC 29838 Score = 107 bits (118), Expect = 2e-18 Identities = 294/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Plus Query 78186 GCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT 78245 ||| || || | ||||||||||| ||||| || |||||||||||| |||| | |||||| Sbjct 28170 GCGGGTGCGTAGGTAGTACATGCCAGTCTTTAGGCCCTTCTTCCATGCGTAAAAGTGCAT 28229 Query 78246 ACTCGACAGCTTGGCCAGACTCGGGTTCT-CCATGAAGATGTTGAGCGACTGGGACTGGT 78304 || || |||| | | ||| ||| |||| | | ||| || |||| |||| Sbjct 28230 CGACGTGAGTCTGGCGA-ATGAGGGCTCTGCCATATATACGTTTAGGCTCTGGCTTTGGT 28288 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACT--TTTGCGGAATCTCCCA 78362 |||||||||| | ||||| || |||||||| | || || | || ||||||||||| Sbjct 28289 CGATGTACGCTGCTCGGTCAGCTGCCATGTCTAAGA--GAATACGCTGAGGAATCTCCCA 28346 Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGAT---GTCCAGCGCTTGTACGCTCCC 78419 | || ||| | | ||| ||||| |||| ||| | ||||| ||| || Sbjct 28347 AACTGTTTTGTACAAGCGCTTGAGCTCGCTTGGGATCTCGTCTATGGCTTGCACGGATCC 28406 Query 78420 ACCG-GCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGAT 78478 | | || | |||| | ||||| ||| | | ||||| || | | |||| Sbjct 28407 ATTGTGCGC-AACAAGCTTGTTCTTCATTGCATGATTCCACAGACCCAGTGCCATCAGAT 28465 Query 78479 CCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGA 78538 ||| || || ||| ||| |||| || || || |||| | | || | ||||| Sbjct 28466 CCCTGAGCAAGTGTTCGTTGATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGA 28525 Query 78539 TGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 | || | ||||| ||||| ||||| ||| ||||| || | ||||||| || || || Sbjct 28526 TATTAGAAGTGTAAGGCTC-AAAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCC 28584 Query 78598 GTCGGCATGGGTGCGACCAG 78617 |||||||| ||||| ||||| Sbjct 28585 GTCGGCATAGGTGCAACCAG 28604 Score = 102 bits (112), Expect = 9e-17 Identities = 293/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 19193 TTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA-ACAACCCGCAGATGTC 19251 || ||||| || || || || || |||||||| || || ||| || ||| || | || Sbjct 29810 TTATTCACTCATGCCACTCCCACACTTTTCAATGCTGGCACGCCACGACCA-CAACTTTC 29752 Query 19252 GAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAA 19311 || ||||| || ||| | || |||||||| || || || ||||| ||||| || Sbjct 29751 TTCGTGCTTCCTCGTTAACATGCAAGAAGACAGCATAGAAGGGATATACGACACGCTTAA 29692 Query 19312 GGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATC- 19369 ||||||| || || ||| | |||| || || || | ||| | || || Sbjct 29691 ACAGTGCGCCTTGATTTCTAAGAGCGCCGGAGGAATTGGTCTTAGTGTGCACAAAATTCG 29632 Query 19370 --CGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAA 19427 | | | | | ||||| ||| || || ||||| || ||||| || | |||| Sbjct 29631 TGCTGCCAACTCGTACA----TCAGGGGCACCAACGGCACGTCCAACGGTCTCATTCCAA 29576 Query 19428 TGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGG 19487 |||| || || | ||| |||| || | ||||| | || || || ||||| | |||| Sbjct 29575 TGCTGCGAGTGTACAATGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGGAAGG 29516 Query 19488 GCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGC 19547 | | ||||| ||||| || ||||| |||||||||||| || | || || | || ||| Sbjct 29515 GAGCATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCTGA 29456 Query 19548 GCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTC 19607 |||||| || | || ||| ||| | || |||||| || ||||| | | Sbjct 29455 AAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCCATGCTCTGTGGGTAC 29396 Query 19608 CGGACCTATTCATGGAGAAGGTTGAG 19633 | || || |||||||||| || ||| Sbjct 29395 CCGATCTGTTCATGGAGAGAGTGGAG 29370 >seq96149 Length=6040 Score = 102 bits (112), Expect = 9e-17 Identities = 343/531 (65%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | | ||| ||| | ||||| || || | || ||||| ||||| Sbjct 946 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGG----AGCTC 1001 Query 59673 AATTAC----GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGA 59728 |||| || ||| ||| ||||| ||| || |||||||||| || || ||| Sbjct 1002 TCTTACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGA 1061 Query 59729 TGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGC 59788 ||| ||||||| || || | | | ||| | || | |||||| | ||||| Sbjct 1062 TGGCATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC 1121 Query 59789 CCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | |||| || ||| || ||||| || | ||| || || Sbjct 1122 TCGCTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCT 1181 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 | ||||||| | | || ||||| | | ||||||| | ||| ||| |||||| || Sbjct 1182 CTTGATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGA 1241 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAG 59967 || || | || || | ||||| || ||||| | | ||||| || ||| Sbjct 1242 TACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAA---GAG 1298 Query 59968 CATCATTTGCACAACGTCTCATAGCTT--TTGCATGCG------TGGAAGGAATCTTCTT 60019 || | ||| || | || || |||||| || ||||||| |||||||| Sbjct 1299 TGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTT 1358 Query 60020 CTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 |||||| |||||| | || || |||||||| ||| | ||||||||||| ||||| | Sbjct 1359 CTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTG 1418 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| ||| ||| |||| | | || |||||||| ||| || ||||| Sbjct 1419 CTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGC 1469 >seq86817 Length=155676 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| ||| || || |||||||| ||||| |||||||| |||| ||| || Sbjct 54024 GCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCTGGAAGCTTCTGTGCCATTTATTGGATC 53965 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| ||| ||||||| ||||| | ||||||||||| | || || | || ||| Sbjct 53964 AAGAAGCGAGGCATCATGCCTGGCCTCACCCTCTCCAACGAGTTTATCGCCAGAGATGAG 53905 Query 60111 GGCCTCCA 60118 |||||||| Sbjct 53904 GGCCTCCA 53897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547851156693120