Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq88945 82.4 7e-11 >seq88945 Length=2605 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34530 ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCC 34589 |||||||||| || ||| | || ||||| ||| ||||| | ||||| || || | Sbjct 1808 ACAGAAGGATTGTAATGAGTGCTTGGAATCCGTCAGATCTGGCAGAAATGGCCCTTCCTC 1867 Query 34590 CGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 ||||||||| | |||||||||||||| || ||||| ||||| ||||| ||| Sbjct 1868 CGTGCCACATGTTTTGCCAATTCTACGTGGCCAATGGAGAGCTCTCCTGTCAG 1920 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 6703 CTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAG 6762 ||| ||||| ||||| ||||| || |||||||||||||| | |||||||||| || || Sbjct 1920 CTGACAGGAGAGCTCTCCATTGGCCACGTAGAATTGGCAAAACATGTGGCACGGAGGAAG 1861 Query 6763 CGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGT 6815 ||||| | ||||| ||| ||||| || | ||| || |||||||||| Sbjct 1860 GGCCATTTCTGCCAGATCTGACGGATTCCAAGCACTCATTACAATCCTTCTGT 1808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447711888946560