Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq93742 93.3 3e-14 seq85083 86.0 4e-12 >seq93742 Length=2862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| || || ||||| || ||||||| |||| |||||| | | Sbjct 534 ATGCAGATTTTCGTGAAGACGCTCACTGGAAAGACTATTACACTTGAGGTCGAATCCTCT 475 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || || || || ||||| ||||| |||| || ||| Sbjct 474 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 415 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || ||||| || || || | || |||| || | ||| |||| |||||| Sbjct 414 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCTTAGCCGACTACAAC 355 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 |||||||||||| || | || ||||| | ||| || | |||||| || Sbjct 354 ATCCAAAAAGAGTCGACCCTTCACTTGGTGCTTCGTCTGAGGGGCGGCAAC 304 >seq85083 Length=2832 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| || || ||||| || ||||||| |||| |||||| | | Sbjct 504 ATGCAGATTTTCGTGAAGACGCTCACTGGAAAGACTATTACACTTGAGGTCGAATCCTCT 445 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || || || || ||||| ||||| | || || ||| Sbjct 444 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 385 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || ||||| || || || | || || | |||| |||| ||||||||||| Sbjct 384 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAAC 325 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || ||||| ||| ||| | || | ||| |||| Sbjct 324 ATTCAAAAGGAGTCCACCCTTCACCTCGTTCTGCG 290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||| | ||||| || || || |||| || || ||| | Sbjct 276 ATGCAGATCTTTGTAAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCT 217 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| || || || ||||| || ||| |||| || ||| Sbjct 216 GACTCCATCGAAAACGTCAAGCAGAAGATTCAAGACAAGGAGGGTATTCCCCCTGATCAG 157 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || ||||| || || || || | || || | || | ||| |||| |||||| Sbjct 156 CAGCGTTTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCTTAGCCGACTACAAC 97 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 |||||||||||| || | || ||||| |||||| || | |||||| || Sbjct 96 ATCCAAAAAGAGTCGACCCTTCACTTGGTGTTGCGTCTGAGGGGCGGCAAC 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355436291251896