Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq96149 205 1e-47 seq97584 190 3e-43 >seq96149 Length=6040 Score = 205 bits (226), Expect = 1e-47 Identities = 416/618 (67%), Gaps = 6/618 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || |||||||| || |||||||| || || || || || || ||| Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1414 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || | || ||||||||||| || | ||| |||||| ||||| Sbjct 1413 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1354 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG------TT 48313 |||||||| ||||| || ||||| | |||||| | || || | | || Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| | ||||||||||| |||||||| ||| |||||| || || || || Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||| |||||| | || || | || || ||||| || || || || || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||| |||||||| || ||||| || |||||||| ||||| || || | || || | Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||||| | ||| || || || ||||||| |||||| | || || |||||| || Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 |||||| || || || ||| ||||| || | | || | ||||| || |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 | ||| ||| | | || || ||||| |||||||| || || ||||| || || Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||| ||||| | ||| || ||| |||| || || | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 Query 48734 TTTTGCAAGGATAGGTTC 48751 | | |||| ||| || Sbjct 873 CTCCTCCAGGAGAGGCTC 856 >seq97584 Length=40438 Score = 190 bits (210), Expect = 3e-43 Identities = 1158/1836 (63%), Gaps = 53/1836 (3%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 || ||||| |||||||| ||||| ||||| ||| ||||| |||| || ||||| Sbjct 28174 GTGCGTAGGTAGTACATGCCAGTCTTTAGGCCCTTCTTCCATGCGTAAAAGTGCATCGAC 28233 Query 76872 GTCAGTTTGG--AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929 || ||| ||| ||| | || || || |||| | || | ||| ||||| |||| Sbjct 28234 GTGAGTCTGGCGAATGAG--GGCTCTGCCATATATACGTTTAGGCTCTGGCTTTGGTCGA 28291 Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 76989 || | ||| ||| ||||| ||||| | || | | |||||||| ||||||| | Sbjct 28292 TGTACGCTGCTCGGTCAGCTGCCATGTCTAAGAGAATACGCTGAGGAATCTCCCAAACTG 28351 Query 76990 TTTTGAAAACTTGTTTGATATCATCTGGAAGGTT-TGTATT--TTGAATGGAACCACCAT 77046 ||||| | | | |||| || ||| | | | ||| ||| | ||| ||| | Sbjct 28352 TTTTGTACAAGCGCTTGAGCTCGCTTGGGATCTCGTCTATGGCTTGCACGGATCCATTGT 28411 Query 77047 CTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAA 77106 | | || | ||||| || ||| |||||||| | | | | | | || | Sbjct 28412 GCGCAACAAGCTTGTTCTTCATTGCATGATTCCACAGACCCAGTGCCATCAGATCCCTGA 28471 Query 77107 GGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 77166 | | || || | | ||| ||||||| ||| | | | ||||| |||||| Sbjct 28472 GCAAGTGTTCGTTGATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAG 28531 Query 77167 TGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCA 77226 || || || || | | |||||||| || | || || | ||||||||| || |||| Sbjct 28532 AAGTGTAAGGCTCAAAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCA 28591 Query 77227 TAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATA 77284 ||||||| |||| || || || | ||||| ||||||| || | | || || | Sbjct 28592 TAGGTGCAACCAGCAAGCTGTTGCGCAGACC--GTGTTCTACAATGCTTGCCTTGAGGGA 28649 Query 77285 TTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTT 77344 |||||||||| | || || |||||| ||| | ||| | ||||| || || || Sbjct 28650 GGCCCAATCCCAACGGGAGGATGGCTCAACATTCCACATATCAAACTGTAGTATGCCTTT 28709 Query 77345 ACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT----CTGTTTCAGCTAGTTCAC 77400 || | || || | |||| || || |||| || | ||||| ||| Sbjct 28710 GCTCGTTGGAGAGCCGGCAAATGTGGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGA 28769 Query 77401 AACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTG 77460 | | | || | |||| ||||| |||||||| | ||||| | ||| Sbjct 28770 T----GATGTGAGAGCGGCAAAATAGATTGTCTCGAAAATGTCGCGGTTGAGGGCGCGTG 28825 Query 77461 CTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTC 77520 | || || || | || | || |||| ||| | || || | ||||| |||| Sbjct 28826 CCTCTTCGCTGTCCCAAGGCATGCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTC 28885 Query 77521 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAAT 77580 ||| |||||||| || || | | ||||| | ||||||| || || || || | Sbjct 28886 CAAGGCCAATAGGCCTGTGACGTCTGTTGGAGTGCTCGGCTTCTGCAACTGGGTAGTAGT 28945 Query 77581 TAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640 | | |||||| | || || | || | || || || ||||| || || || Sbjct 28946 TGACGTCTATTACCTTGTTCAAGTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCT 29005 Query 77641 GAAAATCAAATC---TTCCATCTATAACAAACATGTT----CAAAGCTATAGATGCTAGA 77693 ||||||| || ||| | | | ||| || || ||| || || || ||| Sbjct 29006 CGTGATCAAATACCATTTTCTCTTTGTCCA-CATATTTAGGCAGAGCCATTGAAGCGAGA 29064 Query 77694 TTACAAACTGCTACCTCATTAGC-GTTGGCATATTGTATTATCTCGGTACATAGATTACT 77752 ||||| || || || || || | | || | | || | || || || || || || Sbjct 29065 TTACATACGGCCACTTCTTTGGGTGATGTGA-ACTGGACAATTTCAGTGCAAAGGTTGGA 29123 Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAA 77811 ||||| || ||||| || | || |||||| || ||||| ||| ||||| || | Sbjct 29124 ACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCGTTGCAGTGA-TCCTTGTAGA 29182 Query 77812 GAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 77871 | ||| | || || ||||| || || || | ||| | || | ||| | || || Sbjct 29183 GCATATAAGGGGTACCGGTCTCTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAG 29242 Query 77872 CTTTTATCATAGAT-TTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAAT 77930 | || | | | ||| | ||| ||| | ||||| | || || ||| |||||| Sbjct 29243 CCTTAACAGCACGTCTTGCACGGCC-CTCGCGCTCATAGCGTGTGTACAGCTCCTCAAAT 29301 Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990 ||| ||||||| || | | || || ||||| || || | || ||||||||| Sbjct 29302 TCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCT 29361 Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 || || ||| |||| | ||| || ||||| |||| ||| |||||| || |||||| Sbjct 29362 CCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGAAGAGATCT 29421 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 | || || || ||||| || || |||||||| || || | |||||| | || || Sbjct 29422 CTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCC 29481 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 | ||||| || || ||||| ||||| | |||| | || ||| || |||||| Sbjct 29482 GCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCT 29541 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | || | || |||| ||| || |||| || ||||||||| | |||||| || || || Sbjct 29542 ACGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCG 29601 Query 78231 TTTGTTCCAGAAATATA--ACTTC-CACTTGCGCGAATATT------ACTAATGGATATC 78281 || || || || || | || || || ||||| || ||||| || Sbjct 29602 TTGGTGCCCCTGATGTACGAGTTGGCA---GCACGAATTTTGTGCACACTAA--GA---- 29652 Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 || |||||||| || ||||||| || | ||||| |||| | || ||||| || || Sbjct 29653 CCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCT 29712 Query 78342 TCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 ||||| ||||| || |||||||| || || || ||| | ||| | | || Sbjct 29713 TCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTG 29772 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || ||||| || | ||| |||| ||||| || || ||| || ||| | ||||| || Sbjct 29773 CCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATAC 29832 Query 78462 GTTTC-AATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 || || |||| | | | ||||| | || | |||||| || || ||||||||||| Sbjct 29833 GTCTCCAATA-CAGCTCTGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACAT 29891 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 || || || || || || | | || | ||| || | || || |||||| || Sbjct 29892 GTGTTGGGGCCTCTCCACAATTGTGCCGTTCAATTTGAAGAGATAAGAGCGTTCCAATGT 29951 Query 78581 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 || || |||||||| ||| | | |||||||| || Sbjct 29952 CTTGAAGCCAAAATAATTGAAAAAGAAGTCTCTTTC 29987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693815677246720