Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq96149 268 1e-66 seq97584 197 2e-45 seq86817 84.2 3e-11 >seq96149 Length=6040 Score = 268 bits (296), Expect = 1e-66 Identities = 420/600 (70%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || ||||||||||| |||||||| || || || || || || ||| Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1414 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || || | ||| ||||||||||| || | ||| |||||| ||||| Sbjct 1413 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1354 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA---TCA---TT 46802 |||||||| || || |||||||| || | |||||| | || || || || || Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | |||||| | ||||||||||||| || ||||| ||| |||||| || || || || Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| |||||| | || || | || || || || || || || || || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 |||||| | |||||| || || ||| ||| |||||| |||| || |||||| || Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||| || ||||| ||| ||||| || | | ||||| | ||| || |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 | ||| ||| | | || || ||||| ||||||||||| || ||||| || || Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| ||||| | ||| || | || |||| ||||| | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 >seq97584 Length=40438 Score = 197 bits (218), Expect = 2e-45 Identities = 955/1504 (63%), Gaps = 26/1504 (2%) Strand=Plus/Plus Query 75724 AAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 75783 ||| ||||||| ||| | | | ||||| |||||| || || || || | | || Sbjct 28494 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 28553 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATT 75843 |||||| || | || || | ||| ||||| |||||||||||||| |||| || || || Sbjct 28554 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 28613 Query 75844 TCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 | ||||| ||||||| || | | || || | |||||||||| | ||| Sbjct 28614 GCGCAGACC--GTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGAT 28671 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 || |||||| ||| | ||| | ||||| || || ||||| | || || | || Sbjct 28672 GGCTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAAT 28731 Query 75962 GTTTCGTAAGTCCCGTCCT--TTT--CAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 || ||| | ||| | || ||| ||||| ||| | | | || | | Sbjct 28732 GTGGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTG----AGAGCGGCAAA 28787 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| ||||| |||||||| | || || | | || || || || |||| Sbjct 28788 ATAGATTGTCTCGAAAATGTCGCGGTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCAT 28847 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | || |||| || | || || || ||||| ||||||| |||||||| || || | Sbjct 28848 GCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACG 28907 Query 76138 CTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAG 76197 | ||||| || ||||||| || ||||| || || | ||||| | || || | Sbjct 28908 TCTGTTGGAGTGCTCGGCTTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAA 28967 Query 76198 ATTTCTGACAACTACTTTAACCACGTCCTTTAGTTT-----GAGAAAATCAAATTTTCCA 76252 || | || || || ||||| || || || || |||| |||||| Sbjct 28968 GTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAATACCATTTTCTC 29027 Query 76253 TCTATC-ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | | || ||| | || ||||| || || || |||||||| ||||| || || || | Sbjct 29028 TTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATACGGCCACTTCTTTGGG 29087 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 | | || | || || ||||| || || ||| | || || || || | || Sbjct 29088 TGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTG 29147 Query 76372 TTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 |||||| || ||| || ||| ||||| || || | | | || || || || || | Sbjct 29148 GTGGTTGGATTTCGCGTTGCAGTGA-TCCTTGTAGAGCATATAAGGGGTACCGGTCTCTA 29206 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGAT-TTGTATCGC 76489 | || | ||| | || | ||| | || ||| || | | | ||| | || Sbjct 29207 TTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAGCACGTCTTGCACGGC 29266 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| | ||||| |||| || | | ||||||||| ||||||| || | | | Sbjct 29267 C-CTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGA 29325 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || || ||||| ||||| | || |||||| || || || ||| || | | ||| Sbjct 29326 CCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATG 29385 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| |||| ||| |||||| || ||||||| || || | ||||| || || Sbjct 29386 AACAGATCGGGTACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCG 29445 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||||| || || | ||||| | || || | ||||| || || ||||| || Sbjct 29446 TGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATT 29505 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | ||| | || ||| || ||||||| || | || |||| ||| || Sbjct 29506 GCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTAC 29565 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTC 76847 |||| || ||||||||| | ||||| || || || || || || || || | || Sbjct 29566 ACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTG 29625 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 || |||||||| || | | || || |||||||| || | ||||| || | | Sbjct 29626 G-CA-GCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGG 29683 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || |||| | ||||| || || || ||||| || || || |||||||| || | Sbjct 29684 CGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGA 29743 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || ||| | ||| | | || || ||||| || | ||| |||| ||||||| Sbjct 29744 AGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAG 29803 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 |||| ||| || ||| | ||||| || || || | || ||| || || | | Sbjct 29804 TGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTCTGATGTCAGTCTTGT 29863 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | | ||||||||| || ||||||||||| || || || | || ||| | | || | Sbjct 29864 GCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCA 29923 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 ||| || | || || |||||| || || || |||||||| ||| | | ||||||| Sbjct 29924 ATTTGAAGAGATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAAGTCTC 29983 Query 77208 TTTC 77211 |||| Sbjct 29984 TTTC 29987 >seq86817 Length=155676 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 ||||| | ||| || ||||| |||||||| || || ||||| || | ||||| ||| Sbjct 53885 GCAAATTTACAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCA 53944 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| | || ||||| |||| |||| | || || ||| |||||||||||| ||| Sbjct 53945 GGCATGATGCCTCGCTTCTTGATCCAATAAATGGCACAGAAGCTTCCAGAAAAGAAGATG 54004 Query 46753 CCTTCTACAGCCGCGAATGCGACAAG 46778 || || || || || || || || || Sbjct 54005 CCCTCGACGGCAGCAAAGGCCACCAG 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712058845263360