Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq42 114 3e-20 >seq42 Length=72740 Score = 114 bits (126), Expect = 3e-20 Identities = 311/469 (66%), Gaps = 13/469 (3%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 20101 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 20042 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 20041 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 19982 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | ||||| | |||||| ||||| || | | |||||| ||| |||| ||| Sbjct 19981 TGGATTCCCGACCTCTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 19922 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| | || || | || || || ||||| | || Sbjct 19921 CCCAACGAGGCCCCCGGCCTGTTTGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 19864 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 19863 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAACTGTGGTTCG 19804 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 19803 CTA---TCCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCT 19747 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 19746 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 19687 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 19686 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 19638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073745474641728