Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq447 150 3e-31 >seq447 Length=587387 Score = 150 bits (166), Expect = 3e-31 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 397429 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 397370 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 397369 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 397311 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| || ||| || | ||| | | | || | | | Sbjct 397310 GATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTT 397251 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||||||||||||||| || || | |||| || || ||||| Sbjct 397250 GTTGATCCACTTCATGGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 397191 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| | || || || | || || || || || ||||| | || || Sbjct 397190 GCGGAAGAGGTGGTCCTTCTCGATGGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 397131 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || || || |||||||| || | ||||||| Sbjct 397130 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 397071 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | ||| || ||| || ||||| ||||| Sbjct 397070 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTGGC 397011 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 || || || |||| || || || || || || | |||| | | || | ||| Sbjct 397010 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATTCCCA 396951 Query 50433 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 396950 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 396892 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 | || ||||| | ||||||| || || |||| ||||| | || |||| Sbjct 396891 TCTTGTACATCTCCCAGATGCGCTGGTAGCGGATGGGGAACAGCACGAATC 396841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718255143914440