Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq447 197 2e-45 seq42 170 3e-37 seq108 95.1 2e-14 >seq447 Length=587387 Score = 197 bits (218), Expect = 2e-45 Identities = 406/589 (69%), Gaps = 20/589 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||| ||||| |||||||| ||||| |||||||||| Sbjct 396849 CTGTTCCCCATCCGCTACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 396908 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | | Sbjct 396909 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCT---CA 396963 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 | ||| || |||||| || || |||| | |||||||||| |||| | ||| || Sbjct 396964 GCAAC-GA-CGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGG 397021 Query 125171 AATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 397022 CATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCGC 397080 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 ||||| ||||| ||||||||| || |||||| | ||||| || |||||||| | Sbjct 397081 GCTGCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCC 397140 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 | || |||| ||| | || || || || || || ||||| ||| ||||| Sbjct 397141 TCATCGACACCTACGTCAAGGACCC-CATCGAGAAGGACCACCTCTTCCGCGCCATCGAG 397199 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA- 125407 || ||||| || | || ||||| | |||| || ||||||| | | || Sbjct 397200 ACCGTGCCCTCGGTCAAGAAGAAGGCCGATTGGGCCATGAAGTGGATCAACAAGGAGGGT 397259 Query 125408 GTCTT--CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| | | |||||| | || | | |||||||||||| |||||||||||||| || Sbjct 397260 GTCGAGACCTTCGCCGAGCGCCTCATTGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCC 397319 Query 125466 GGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 397320 GGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTT 397378 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 397379 CAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 397427 >seq42 Length=72740 Score = 170 bits (188), Expect = 3e-37 Identities = 330/483 (68%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | ||| ||||| | || || |||||||||||| | |||||||| |||| || Sbjct 20095 GGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTCGACCTG 20036 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || ||| ||| || ||| || ||| | || | || || | || ||| | Sbjct 20035 AAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTGTGGATT 19976 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGAC-GGTGGCTACTGGAGCCTAATGTGCCCCGA 97075 || || | |||||||||||||| | ||| || ||| ||||| || | |||||| | Sbjct 19975 CCCGACCTCTTCATGAAGCGCGTGGA-GACGGGCGGCGACTGGTCGCTCTTTTGCCCCAA 19917 Query 97076 CTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTA 97135 | | | ||||| |||| || | |||||| | ||||| |||| |||||| | ||| Sbjct 19916 CGAGGCCCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAGCGCTA 19857 Query 97136 CGAGCAAGAGGGCCGATACGTGAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCAT 97192 |||||| |||||||| || | | || ||| | || | ||||||||| || || Sbjct 19856 CGAGCAGGAGGGCCG---CGCGCGCCGCGTGGTCAAGGCCCAGGAACTGTGGTTCGCTAT 19800 Query 97193 CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCG 97252 | | | | ||| | ||||| || || || ||||| || |||||||| || || | Sbjct 19799 CCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGG 19740 Query 97253 CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 ||| |||||| | ||| | ||||||||| || || || ||||||||||| | || Sbjct 19739 CAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAGGTCGT 19680 Query 97313 AGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAA 97372 ||||| | || || |||||| ||| || ||| ||||| ||| || |||||||| Sbjct 19679 CCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTGCCCAA 19620 Query 97373 GTT 97375 ||| Sbjct 19619 GTT 19617 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | | | | ||||| ||||| ||||| | Sbjct 18943 TACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCA-TCATCGACATGGCCGCCGATCGCTC 18885 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | | | Sbjct 18884 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTCGCTAA 18825 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || ||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| || Sbjct 18824 GCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCT 18765 >seq108 Length=164275 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||| | |||||||||||| |||||||||||||| ||| | | ||| ||||||| Sbjct 12290 CTGGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCGAGC--TCCTGCT-CCATCTTC 12234 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 ||||||||||||||||| ||||||||||| ||| Sbjct 12233 TGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTG 12201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741045110611960