Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq753 107 2e-18 seq1307 86.0 5e-12 >seq753 Length=48462 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| || || ||||| | ||||||| ||||||| || | | Sbjct 14077 GACGTTGCCGAGATCGCCAACATGACGCTCCTCATCGTCGGGTCCGCCGTGCTTCTTGC- 14135 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 14136 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 14195 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 14196 GGACGTGGAAGCCGTG 14211 >seq1307 Length=263854 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || || | || ||||||| ||||| ||||| Sbjct 170583 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGCTTACCA 170642 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | ||||||||| ||| | ||||| ||||| ||| ||||| || Sbjct 170643 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 170702 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | ||| |||| ||| ||||| || || |||| || Sbjct 170703 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTC 170762 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 170763 TTGACGAAGATCTGCAT 170779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414565114986274