Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq932 123 6e-23 seq1307 116 9e-21 seq422 116 9e-21 seq1445 114 3e-20 seq1223 114 3e-20 seq447 114 3e-20 seq638 109 1e-18 seq414 109 1e-18 seq1225 100 7e-16 seq1356 89.7 1e-12 >seq932 Length=1165899 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | ||||| | ||||| || || || || ||| Sbjct 391071 GTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 391130 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || |||||||| || ||||| || |||||||||||| || Sbjct 391131 GCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCTTA 391190 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | || ||||| || || || ||||| || || || || Sbjct 391191 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 391250 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 391251 TTCACGAAGATCTGCATT 391268 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 390387 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 390446 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| ||||| || || || || ||||||||||| ||| || Sbjct 390447 GCGAAGATAAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 390505 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || || |||||||| || || || || Sbjct 390506 CACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAGCGT 390565 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 390566 CTTGACGAAGATCTGCAT 390583 >seq1307 Length=263854 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | || || | |||||| || || || || ||| Sbjct 170583 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGCTTACCA 170642 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| |||||||| || || || || || ||||||||||| ||| || Sbjct 170643 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGC-TT 170701 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||||| | || ||||| || || || ||||| || || || || Sbjct 170702 CACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGT 170761 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 170762 CTTGACGAAGATCTGCAT 170779 >seq422 Length=916903 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || ||||| Sbjct 624966 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGCTTTCCG 624907 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || ||||| ||||||||||| ||| || Sbjct 624906 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCTTTGTCCTGAATCTTCTGC-TT 624848 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | |||||||| || || |||||||| || || || || Sbjct 624847 GACGTTCTCGATCGTGTCGCTGGACTCTACCTCGAGGGTGATAGTCTTGCCGGTCAGCGT 624788 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 624787 CTTGACGAAGATCTGCAT 624770 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 624510 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 624451 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| ||||| || || || || ||||||||||| ||| || Sbjct 624450 GCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGC-TT 624392 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || || || ||||| || || || || Sbjct 624391 GACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 624332 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 624331 CTTCACGAAGATCTGCATT 624313 >seq1445 Length=562458 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || ||| Sbjct 27916 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGCTTACCA 27857 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| |||||||| || || || || || |||||||||||| || Sbjct 27856 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTC 27797 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | || ||||| || || || ||||| || || || || Sbjct 27796 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 27737 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 27736 TTCACGAAGATCTGCATT 27719 >seq1223 Length=762 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || ||| Sbjct 525 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGCTTACCA 584 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| |||||||| || || || || || |||||||||||| || Sbjct 585 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTC 644 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | || ||||| || || || ||||| || || || || Sbjct 645 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 704 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 705 TTCACGAAGATCTGCATT 722 >seq447 Length=587387 Score = 114 bits (126), Expect = 3e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||||| ||||| | ||||| Sbjct 241067 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGGCCGTC 241008 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| ||||||||||| || || || || || Sbjct 241007 CTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 240948 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | || ||||| | || ||||| || || || | Sbjct 240947 CTGAATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGG 240889 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || || || || || ||||||||| Sbjct 240888 TCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 240854 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 241295 AAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 241236 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || ||||| || || || || || Sbjct 241235 CTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTC 241176 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || ||||| | || ||||| || || ||||| Sbjct 241175 CTGAATCTTTTGCTTGACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATAGT 241116 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 241115 CTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 241083 >seq638 Length=1393837 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || ||||| Sbjct 263057 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCG 263116 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || ||||| || ||||||||||| ||| || Sbjct 263117 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGC-TT 263175 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||||| | || ||||| || || || ||||| || || || || Sbjct 263176 CACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 263235 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 263236 CTTCACGAAGATCTGCATT 263254 >seq414 Length=771140 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 166753 AAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 166694 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| |||||||| || || || || || || Sbjct 166693 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTC 166634 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||||| | || ||||| || || || | Sbjct 166633 CTGAATCTTCTGC-TTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGG 166575 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 166574 TCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 166541 >seq1225 Length=780 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 600 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 541 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| ||||| || || || || ||||||||||| ||| || Sbjct 540 GCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGC-TT 482 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || || || ||||| || || || || Sbjct 481 CACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 422 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 421 CTTCACGAAGATCTGCATT 403 >seq1356 Length=778 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || || Sbjct 185 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 126 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||| ||||| ||| || Sbjct 125 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 67 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | ||| ||| || | || ||||| || || || ||||| ||||| || | Sbjct 66 CACGTTCTCGATGGTGTCG-GAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 8 Query 104541 TTTTTAC 104547 | || || Sbjct 7 TCTTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151375961763868