Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq447 114 1e-20 seq422 109 5e-19 seq1445 105 6e-18 seq1307 105 6e-18 seq1223 105 6e-18 seq1225 104 2e-17 seq414 98.7 8e-16 seq932 91.5 1e-13 >seq447 Length=587387 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| ||||| || || || ||||||| ||||| Sbjct 241057 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGAGTACGGCCGTCCTCGAGCTG 240999 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| || | | ||||||||| ||| || Sbjct 240998 CTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 240939 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || || ||| | ||||| ||||| || ||||| || ||||| Sbjct 240938 CTGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 240879 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 ||| || ||||| || |||||||| || Sbjct 240878 GAGGGTCTTCACGAAGATCTGCATTGT 240852 >seq422 Length=916903 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 624505 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 624446 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | || ||||||||| ||| |||||||||| Sbjct 624445 GATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGTT 624386 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 624385 CTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 624326 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 624325 GAAGATCTGCATTGT 624311 >seq1445 Length=562458 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || || | || ||||||| |||||| Sbjct 27922 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 27863 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | |||||||||||| || | || ||||||||| ||| || Sbjct 27862 TTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTT 27803 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 27802 TGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 27743 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 27742 AGGGTCTTCACGAAGATCTGCATTGT 27717 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || |||| | || || ||||||| ||||| Sbjct 28150 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGC-CGTCCTCGAGCTG 28092 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| || | || ||||||||| || || Sbjct 28091 CTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTT 28032 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || || |||| ||||| ||||| || || || || ||||| Sbjct 28031 CTGCTTCACGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGT 27972 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 27971 GAGGGTCTTGACGAAGATCTGCAT 27948 Score = 102 bits (112), Expect = 7e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 28377 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 28318 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | || ||||||||| || ||| Sbjct 28317 TTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 28258 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||||| || ||||| ||||| ||| Sbjct 28257 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTACCCGTG 28198 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 28197 AG-GTCTTGACGAAGATCTGCAT 28176 >seq1307 Length=263854 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || || | || ||||||| |||||| Sbjct 170577 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 170636 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | |||||||||||| || | || ||||||||| ||| ||| Sbjct 170637 TTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTC 170696 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 170697 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTT 170756 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || || || || |||||||| || Sbjct 170757 AGGGTCTTGACGAAGATCTGCATGGT 170782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 170349 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGC 170408 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | ||||||||| || ||| Sbjct 170409 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 170468 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||| ||||| || || || ||||| ||| Sbjct 170469 TGCTTCACGTTTTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTG 170528 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 170529 AGGGTCTTGACGAAGATCTGCAT 170551 >seq1223 Length=762 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || || | || ||||||| |||||| Sbjct 519 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 578 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | |||||||||||| || | || ||||||||| ||| || Sbjct 579 TTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTT 638 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 639 TGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 698 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 699 AGGGTCTTCACGAAGATCTGCATTGT 724 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || |||| | || || ||||||| ||||| Sbjct 291 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGC-CGTCCTCGAGCTG 349 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| || | || ||||||||| || || Sbjct 350 CTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTT 409 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || || |||| ||||| ||||| || || || || ||||| Sbjct 410 CTGCTTCACGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGT 469 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 470 GAGGGTCTTGACGAAGATCTGCAT 493 Score = 102 bits (112), Expect = 7e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 64 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 123 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | || ||||||||| || ||| Sbjct 124 TTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 183 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||||| || ||||| ||||| ||| Sbjct 184 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTACCCGTG 243 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 244 AG-GTCTTGACGAAGATCTGCAT 265 >seq1225 Length=780 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 595 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 536 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | || ||||||||| ||| |||||||| | Sbjct 535 GATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTT 476 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 475 CTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 416 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 415 GAAGATCTGCATTGT 401 >seq414 Length=771140 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| || || | Sbjct 166732 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 166673 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | || ||||||||| ||| |||||||| | Sbjct 166672 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTT 166613 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| ||| | ||||| ||||| || ||||| || ||||| || || || || Sbjct 166612 CTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 166553 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 166552 GAAGATCTGCAT 166541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || | ||||| |||||||| || || | Sbjct 166960 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 166901 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | || ||||||||| || |||||||| | Sbjct 166900 GATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 166841 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||||||| | ||||| ||||| || || || || |||||||| || || || Sbjct 166840 CTCGATGGTATCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGAC 166781 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 166780 GAAGATCTGCAT 166769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| ||||||| |||||||| ||| || | Sbjct 167188 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGCCCGTCCTCGAGCTGCTTGCCGGCGAA 167129 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | | ||||||||| || |||||||| | Sbjct 167128 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 167069 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | ||| ||||| || ||||| || ||||| ||||| || || Sbjct 167068 TTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGAC 167009 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 167008 GAAGATCTGCAT 166997 >seq932 Length=1165899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 390381 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 390440 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| ||| ||| Sbjct 390441 TTGCCGGCGAAGATAAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 390500 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || ||| | ||||| ||||| || || || || ||||| Sbjct 390501 TGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTC 390560 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 390561 AGCGTCTTGACGAAGATCTGCAT 390583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421243391187521