Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq932 95.1 1e-14 seq422 95.1 1e-14 seq1225 89.7 5e-13 seq719 87.8 2e-12 seq447 84.2 2e-11 seq1224 82.4 7e-11 >seq932 Length=1165899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| |||||||| || | ||| || ||| || |||| | ||||| Sbjct 391058 CACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTC 391117 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | ||||| || ||||| || ||||| ||||| | Sbjct 391118 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 391177 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 ||| ||| ||| ||| ||| ||||| || | ||||| || | |||||||| | Sbjct 391178 AATCTTTTGCTTAACGTTCTCGATGGTGTC-GCTCGACTCGACCTCGAGGGTGATGGTCT 391236 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||| ||||||||||| Sbjct 391237 TGCCGGTCAGGGTCTTCACGAAGATCTGCAT 391267 >seq422 Length=916903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| || ||||| || | ||| || ||| | ||| | ||||| Sbjct 624523 CACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 624464 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | |||||||| ||||||||||| || ||||| | Sbjct 624463 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTG 624404 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||||| ||| ||||| || | ||||| || | |||||||| | Sbjct 624403 AATCTTCTGCTTGACGTTCTCGATCGTGTC-GCTCGACTCGACCTCGAGGGTGATGGTCT 624345 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||| ||||||||||| Sbjct 624344 TGCCGGTCAGGGTCTTCACGAAGATCTGCAT 624314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | ||||| | | ||||| || ||||||||||| |||||| Sbjct 624924 TCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCTTTG 624865 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | ||| || ||||||| ||| ||||| || ||| || || || | |||| Sbjct 624864 TCCTGAATCTTCTGCTTGACGTTCTCGATCGTGTC-GC-TGGACTCTACCTCGAGGGTGA 624807 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || || || ||||||||||| Sbjct 624806 TAGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 624770 >seq1225 Length=780 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| || ||||| || | ||| || ||| | ||| | ||||| Sbjct 613 CACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 554 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | |||||||| ||||||||||| || ||||| | Sbjct 553 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTG 494 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 ||| || ||| ||| ||| ||||| || | ||||| || | |||||||| | Sbjct 493 AATCTTCTGCTTCACGTTCTCGATCGTGTC-GCTCGACTCGACCTCGAGGGTGATGGTCT 435 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||| ||||||||||| Sbjct 434 TGCCGGTCAGGGTCTTCACGAAGATCTGCAT 404 >seq719 Length=131621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 35902 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 35961 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 35962 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 36020 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 36021 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 36057 >seq447 Length=587387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || ||||||||||| || ||| Sbjct 241237 TCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTG 241178 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | ||| ||| ||||||| ||| ||||| || ||| ||||| || | |||| Sbjct 241177 TCCTGAATCTTTTGCTTGACGTTCTCGATCGTGTC-GC-TGGACTCGACCTCGAGGGTGA 241120 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || || || ||||||||||| Sbjct 241119 TAGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 241083 >seq1224 Length=756 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || ||||||||||| || ||| Sbjct 525 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTG 466 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| ||| ||||| | ||||| || | |||||| Sbjct 465 TCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 406 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 405 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282676863560