Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq628 134 2e-27 seq391 132 8e-27 seq360 132 8e-27 >seq628 Length=1085379 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 170840 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 170899 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 170900 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 170959 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 170960 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 171019 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||| | | || ||||| || Sbjct 171020 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCGCACCCTCTACGGTTTCGG 171078 >seq391 Length=311674 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 136083 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 136142 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 136143 GGTGTCAAGCGTATCTCAGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 136202 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 136203 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 136262 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 136263 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 136303 >seq360 Length=621056 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 326926 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 326867 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | ||| | ||| ||||| Sbjct 326866 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGTGTGCTCAAGGTCTTC 326807 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | || || | ||| ||||||||||| | ||||| ||| Sbjct 326806 CTCGAGAACGTCATTCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 326747 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 326746 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 326706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073809339053