Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq447 141 1e-28 >seq447 Length=587387 Score = 141 bits (156), Expect = 1e-28 Identities = 391/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 397429 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 397370 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 397369 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 397310 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || |||| || | ||| | | || | | || | | Sbjct 397309 ATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTG 397250 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||||||||||||||| || || | |||| || || ||||| Sbjct 397249 TTGATCCACTTCATGGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 397190 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| | || || || | || || || || || ||||| | || ||| Sbjct 397189 CGGAAGAGGTGGTCCTTCTCGATGGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 397130 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || || || |||||||| || | ||||||| Sbjct 397129 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGC 397070 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | ||| || ||| || ||||| ||||| Sbjct 397069 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTGGCG 397010 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | || | || | ||| Sbjct 397009 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGCTGAGCGATTCCCA 396951 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 396950 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 396892 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 | || ||||| | ||||||| | || |||| ||||| | || |||| Sbjct 396891 TCTTGTACATCTCCCAGATGCGCTGGTAGCGGATGGGGAACAGCACGAATC 396841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935356216360