Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq42 214 5e-50 >seq42 Length=72740 Score = 214 bits (236), Expect = 5e-50 Identities = 851/1325 (64%), Gaps = 26/1325 (2%) Strand=Plus/Minus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || || |||||||| || || || || || || |||||||| || || || || Sbjct 20113 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 20054 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| || || || || ||| ||| || || ||||| || || || ||||| Sbjct 20053 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 19994 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| | || ||| || | |||| || ||||||||||||||| | || | ||| Sbjct 19993 TTCTACGGCCTGTGGATTCCCGACCTCTTCATGAAGCGCGTGGAGACGGGCGGCGACTGG 19934 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || ||||||||||| |||| || || || | || ||||| | || | | Sbjct 19933 TCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTCGAG 19874 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA----GACAATTCCCGCACA 364115 | ||||| || || |||||| || || | ||| ||| | Sbjct 19873 GAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCC----A 19818 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 | | || ||||| || ||| | || |||||||| ||||| || || ||||| ||| |||| Sbjct 19817 GGAACTGTGGTTCGCTATCCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTA 19758 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAA 364235 ||| || | |||||| |||||||||||||||||||||| || || || ||| | || Sbjct 19757 CAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAA 19698 Query 364236 CCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||| || || ||| | | | ||||| | ||||||||| ||||| || ||||| || Sbjct 19697 CCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 19638 Query 364296 GTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGA 364355 ||| ||||||| || ||| | | | || || |||||| || | || | || Sbjct 19637 CTCGCTCGCGCTGCCCAAGTTCATCACCAACGGCGAGTTCGACCACAAGAAGCTGCACGA 19578 Query 364356 CGTAACCT-ATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 ||| | | | || | || || ||| ||||||| ||||||| || || || || Sbjct 19577 CGT--CGTGAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCC 19520 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 | || || ||| || || ||||| || | || || || | || || |||||| Sbjct 19519 GTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGC 19460 Query 364474 CTCGCTGACGTTTTTATG---ATGCTCAA--GATGGCATTTGATTCGCCTGACGCTCGTG 364528 || || ||||| || ||| |||| | | ||| | || || | || || || | Sbjct 19459 CTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGA---GA-GCGAC-GAGGCCCGCG 19405 Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588 || || | ||||| || || || || | ||||| || || ||| || Sbjct 19404 AGCTCAACCGCGCCATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGC 19345 Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648 | || | |||| | ||| || || ||||| || || || |||| || Sbjct 19344 TCGCGCAGGTTGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGC 19285 Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708 ||||| || || ||| ||| ||| || | | | ||| |||||| ||||| || Sbjct 19284 TCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCG 19225 Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768 ||||| | |||| ||| |||||||| ||| | ||||||||||||||||| | Sbjct 19224 CCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCT 19165 Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828 | || | |||||||| || |||||||||||||| || || | || | ||| | || Sbjct 19164 CGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACA 19105 Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888 | ||||| | || |||| || || | || || || || |||| | || || Sbjct 19104 CCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTGC 19045 Query 364889 CCGACCGCGGGCTGTGGGGTGACAGC-ATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 | ||||| || | || | | || | |||||| | || || | || || || Sbjct 19044 AGCAGCGCGGCCTCT-GGTCGCCTGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCG 18986 Query 364948 GTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGA 365006 || ||| || || |||| | || || || | ||| | ||||| ||||| ||||| Sbjct 18985 GTACAGCGCA-TCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGA 18927 Query 365007 AATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAG 365066 | | ||| |||| || ||||| ||||||||| || | ||| ||||| Sbjct 18926 GCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGCCTACATCGACCAGAG 18867 Query 365067 CCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTT 365126 ||||||| | ||||| | |||| |||| | | ||| ||||| || || ||||| || Sbjct 18866 CCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTCGCTAAGCTCACCTCGATGCACTT 18807 Query 365127 CTACG 365131 ||||| Sbjct 18806 CTACG 18802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303328200489422