Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq932 84.2 2e-11 seq1445 82.4 6e-11 seq1223 82.4 6e-11 >seq932 Length=1165899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| ||||| || || || || || ||| |||| ||||||||| Sbjct 390583 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCCAGC 390524 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || || || || ||| || || || ||| |||| ||||| Sbjct 390523 GACAC-GATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 390465 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | || ||||| || | || || | | ||| ||||||| || || Sbjct 390464 GCAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 390405 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || ||||| || Sbjct 390404 CATCCAGAAGGAGTCCAC 390387 >seq1445 Length=562458 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || |||||||| || ||||| ||| |||| ||||||||| Sbjct 28176 ATGCAGATCTTCGTCAAGAC-CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCAGC 28234 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | || || || || || || || || || | ||| ||||||| Sbjct 28235 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 28294 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | ||||| | || ||||| || | || || | | ||| ||||||| || ||| Sbjct 28295 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 28354 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || || ||||| || Sbjct 28355 ATCCAGAAGGAGTCCAC 28371 >seq1223 Length=762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || |||||||| || ||||| ||| |||| ||||||||| Sbjct 265 ATGCAGATCTTCGTCAAGAC-CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCAGC 207 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | || || || || || || || || || | ||| ||||||| Sbjct 206 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 147 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | ||||| | || ||||| || | || || | | ||| ||||||| || ||| Sbjct 146 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 87 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || || ||||| || Sbjct 86 ATCCAGAAGGAGTCCAC 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425336115318520