Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1352 127 1e-24 seq638 84.2 1e-11 >seq1352 Length=12447 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 1655 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 1714 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1715 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1749 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4361 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4420 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 4421 GCTGACAATATTTAGCCTT 4439 >seq638 Length=1393837 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | || || ||| |||||| || || ||||| || | | || | Sbjct 262582 ACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 262641 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | || || ||||| || || ||||| || || |||| |||| ||| || || Sbjct 262642 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTT 262701 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||||||||||||| || || || || || || || | || || Sbjct 262702 GTCCTGGATCTTCTGCTTCACATTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGAT 262761 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| |||| || || ||||| |||||||| Sbjct 262762 CGTCTTACCGGTCAGCGTCTTGACGAAGATCTGCAT 262797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940991020951