Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq42 553 3e-152 seq447 416 5e-111 seq108 145 1e-29 >seq42 Length=72740 Score = 553 bits (612), Expect = 3e-152 Identities = 978/1418 (69%), Gaps = 71/1418 (5%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| ||||||||| || || | |||||| | ||| | |||||||||||||||||||| Sbjct 18726 ACGGTGAACTGGATCGCGTTGG-CGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGTCTT 18784 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 ||| || || |||||||| || |||||| | || ||||| | | ||| | Sbjct 18785 GAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTAGCGAAC--GAG-----G 18837 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 | ||||| || ||| |||||| |||||||||||||||| | ||| || || || Sbjct 18838 G-----CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATC 18892 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||||||| ||||| | | ||| | | ||| || | |||||||| | ||| Sbjct 18893 GGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCTT 18952 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || || ||||||| | | |||||| ||| |||||||| ||||| || ||||| | | Sbjct 18953 GATGTCGTCGGGGATCTCCTCGATGCGCTGTACCGAGCCGTTGTGCGAGACGAGCTTGTT 19012 Query 244036 -----GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAG---GTGC 244087 ||||| | | ||| ||||| ||||| | || |||| ||| |||| Sbjct 19013 CTTGAGCGCAGGCGA-----CCAGAGGCC---GCGCTGCTGCAGCTCGCGCAGAAGGTGC 19064 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| || || || || || | || | |||||| ||||| |||| | || Sbjct 19065 TCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAG 19124 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||| | || ||| |||||||||| ||||||| || || || |||||||||| | Sbjct 19125 GGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCC 19184 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 || || || ||| | || |||||| |||| | | |||| | ||||||| Sbjct 19185 ACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCC 19244 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 ||| || |||| | | || |||||| | ||| ||| ||| |||||| Sbjct 19245 CACCTGTCCGACGGCAC---------GACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG 19295 Query 244328 CTGACG-GGGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 |||| |||| ||||||||||||| |||||| || || ||| || |||| | Sbjct 19296 --GACGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTC---GT 19350 Query 244386 TCTCGTCGA---GGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 || | ||| |||||||||||||||||||||||||||| ||| | ||||||| Sbjct 19351 TCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCGGTTGAGCTCGCGGG 19410 Query 244443 CCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 ||| | ||| | ||| || ||| |||||||||||||||||||| |||||||| | Sbjct 19411 CCTCGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTC 19470 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 ||||||||||||| ||||| ||| |||| ||| ||| |||||||||||||| ||| Sbjct 19471 CGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCACGGGGTAGTAGT 19530 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || ||||||||||||||||||||| ||||| || ||||||||| |||| || Sbjct 19531 TGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCT 19590 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 |||| | |||| || ||||||| |||| | || |||| Sbjct 19591 TGTGGTCGAA------------CTCGCCGTTGGTGAT------GAACTTGGGCAGCGCGA 19632 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 |||||||||||| ||||||||||| || | ||||||||||| | ||| |||| Sbjct 19633 GCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGC 19692 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | ||||| ||| ||||||||| |||||||| || ||||||||| |||||||||||| Sbjct 19693 ACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGT 19752 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| |||||| ||||| |||||||||| ||| | | |||| | ||| | Sbjct 19753 CCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCACA 19812 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | ||| ||||||||| | ||| || |||||| ||||||||| |||| Sbjct 19813 GTTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCT 19872 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG--CACGACGCCGGGCACATGAG 244980 |||||||||| |||||| || ||||||||| | || | ||||| | ||| Sbjct 19873 CCTCGAACTCCTTGCCCCACGAGTCAAACAGGCCGGGGGCCTCGTTG--GGGCAAAAGAG 19930 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||| |||||||| || || | || ||||||||||||||| ||||| ||| | | Sbjct 19931 CGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAAGAGGTCGGGAATCCACAGGCCGTA 19990 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 |||||| || | || | | ||| ||| ||| ||||||| |||| || | ||||| Sbjct 19991 GAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTC 20050 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| ||| ||||||||||||| | ||||| |||| Sbjct 20051 AAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGA 20088 Score = 158 bits (174), Expect = 2e-33 Identities = 256/356 (72%), Gaps = 12/356 (3%) Strand=Plus/Plus Query 245288 CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347 |||||||| ||||||||||||||| || ||||| |||||| |||||||| || Sbjct 20337 CCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCCTCGATC 20396 Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG-GGGCTTGGGGCTGCACGA 245406 |||| ||||||| |||| || ||||| || |||||||| |||| |||| ||| | Sbjct 20397 GAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGG-TGCCGGC 20455 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCT 245465 |||||| || || ||| |||||||||| ||| ||| ||| || | || |||| |||| Sbjct 20456 GTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGTGACAAGAGGTCGTAGGTCT 20514 Query 245466 GGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGC 245524 || || ||| ||||||||| ||| | | ||| ||| | |||||| ||||| Sbjct 20515 CGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGC-CACGCGCATGAGCATGTGC 20573 Query 245525 TGGGG-CG-TCT-CGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTC 245581 ||||| || ||| |||| || ||| || ||| | ||| ||||||||||| ||| Sbjct 20574 TGGGGTCGCTCTACGATCTTGCCGTCG---ACCCTGAAGAGGTACGAGCGCTCGAGGGTC 20630 Query 245582 TTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 ||||| |||||||| | |||| |||||| | || | ||| || || ||||| Sbjct 20631 TTGAAGCCAAAGTAGGTGTAGTTGAAGTCGCGCTCGTACTTGATCGCGGCCTCGAG 20686 >seq447 Length=587387 Score = 416 bits (460), Expect = 5e-111 Identities = 615/864 (71%), Gaps = 28/864 (3%) Strand=Plus/Plus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 ||||| ||||||| |||||||||||||| || |||| |||||| |||||||| Sbjct 396865 ACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAG 396924 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCC 42411 | || ||| | |||| | |||||| || || | |||| | | ||| Sbjct 396925 TCGATCTGAGCTCCGACATGAAGCACTGGGAATCGCTCAGCAACGACGAGAGGCACTTCA 396984 Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | |||||||||||||||||| |||||||| || ||||| || ||| Sbjct 396985 TCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGGCCGAGAATCTCGCCG 397044 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | | |||||||| ||||||||| |||||||||||||||||||||||||| || | Sbjct 397045 GCCGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAAATCG 397104 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATC 42591 |||| |||||| | ||||| ||| ||||| | || || |||| ||| || ||| | Sbjct 397105 CCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACACCTACGTCAAGGACC 397164 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 || ||||| || || ||| ||||| ||||| |||||| |||||||||||| Sbjct 397165 CCATCGAGAAGGACCACCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAGG 397224 Query 42652 CGGACTGGGCGCTCAACTGGATC------GAGAGTCCCGACGCAACGTTCGGCGAGAGGC 42705 | || ||||| | || |||||| ||| || | || || |||| |||| | | Sbjct 397225 CCGATTGGGCCATGAAGTGGATCAACAAGGAGGGT---GTCGAGACCTTCGCCGAGCGCC 397281 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | | | || ||||||||||||||||||||||||| ||| |||| ||||||||||| Sbjct 397282 TCATTGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCT 397341 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || || || |||||||| ||| ||||| ||||| | |||||| | Sbjct 397342 GGCTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGC 397400 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 || ||||| || || | ||||| ||||||||||| | | | | | | | | ||||| Sbjct 397401 GATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCATGCTCGTAA---ACAAG 397457 Query 42885 CCCTCGAAGGAGCGGGTCCGGGC-CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||||||| || || | || || |||||| |||||||| ||||| |||||||| || Sbjct 397458 CCCTCGACCGA-CGTGCCCAAGCAGATCATCCTCGAGGCCGTCGAGATTGAGAAGGAATT 397516 Query 42944 CCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 | | || |||||||||||||| |||| ||||||||||| ||||||||||||| |||| Sbjct 397517 CGTGACCGAGTCGCTGCCCGTGGCCCTCATCGGCATGAACGCCGACCTCATGTGCCAGTA 397576 Query 43004 CATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTA 43057 |||| ||| ||| ||||||| ||||| ||| | ||| || || | ||| Sbjct 397577 CATCGAGTTCGTGGCCGACCGCCTCCT-CGCC-----GCCCTCGGCTGCGAGAAGCACTA 397630 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | | ||| ||| | |||||| ||||| | ||||||||||||||||| Sbjct 397631 CAACCAGACCAACCCGTTCCCGTGGATGGAGCTTATCTCCCTCGAGGGCAAGACCAACTT 397690 Query 43118 TTTCGAGAAGCGCGTCGCCGACTA 43141 ||||| ||||||| ||| || Sbjct 397691 CTTCGAACGCCGCGTCGGCGAGTA 397714 >seq108 Length=164275 Score = 145 bits (160), Expect = 1e-29 Identities = 174/231 (75%), Gaps = 14/231 (6%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||| |||| || || | |||||||||||||| |||||||||||||| Sbjct 12389 CTGTTCAACGCCGCCCAGACCATCCCGTCGATCAAGAAGAAGGCCGACTGGGCGCTCAAG 12330 Query 42669 TGGATCGAGAGTCCCGA---CGCA---ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||||||| | |||| || | || || || || | ||||| | || ||||| Sbjct 12329 TGGATCGCCA---CCGAAGGCGTAGAGACCTTTGGTCAGCGCCTGGTCGGATTCGCCGCC 12273 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781 ||||||||||||||||||||| || ||| ||||||||||||||||||| || || Sbjct 12272 GTCGAGGGCATCTTCTTCTCGAGCTCCT---GCTCCATCTTCTGGCTCAAGAAGCGCGGC 12216 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 || |||||||| || ||||||| ||||| |||||||| | ||||| || Sbjct 12215 CTC-ATGCCCGGCCTGGCCTTCTCCAACGAGCTCATCAGTCGCGACGAAGG 12166 Score = 100 bits (110), Expect = 5e-16 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||||||||||||| | |||||| | ||| Sbjct 11599 ATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGACCTGAGCTCCGAC 11658 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 | | |||| | || || | | | || || ||| ||||| |||| |||| Sbjct 11659 ATGAAGCACTGGAA--CAGCCTCAGCGGCGATGAGCAGCACTTCATCAAACACATCCTGG 11716 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 |||||||||| ||| |||||||| ||||| |||||||||||| ||||||||| | Sbjct 11717 CCTTCTTCGCGGCCAGCGACGGCATCGTCAACGAGAACCTGGCCGGGCGGTTCATGACCG 11776 Query 42487 AGGTGCAG 42494 |||||||| Sbjct 11777 AGGTGCAG 11784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944321245750960