Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq932 93.3 3e-14 seq447 93.3 3e-14 seq1445 86.0 5e-12 seq1223 86.0 5e-12 >seq932 Length=1165899 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| ||||||||| |||||||| || ||| Sbjct 390357 CCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 390416 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 390417 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCGGGAGGG 390476 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| ||| || ||||| | | ||| | | || | || ||| Sbjct 390477 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 390535 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 390536 CTCGAGGGTGATAGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 390583 >seq447 Length=587387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 241082 ACCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 241023 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || |||| || | ||||||||||| || || || ||||||||||| | Sbjct 241022 -AAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAG 240964 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || ||| |||||| ||| || ||||| | | ||| | | || | || ||| Sbjct 240963 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCG 240905 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || || || ||||| || || ||||| ||||| |||||| || Sbjct 240904 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 240851 >seq1445 Length=562458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || || |||||| ||||||||| |||||||| || |||| | || | Sbjct 28165 AGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGG 28106 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || || ||||||||||| || | | ||| Sbjct 28105 C-CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTC 28047 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||||| | | |||| | | || | || ||| |||| | Sbjct 28046 CTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAG 27988 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || || || ||||| || || || || ||||| ||||| Sbjct 27987 TAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27948 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || |||||| ||||||||| |||||||| || |||| || Sbjct 28392 AGACGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 28333 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || |||||||||||||| || | | ||| Sbjct 28332 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGAATACCCTCC 28273 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 28272 TTGTCCTGGATCTTCTGCTT 28253 >seq1223 Length=762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || || |||||| ||||||||| |||||||| || |||| | || | Sbjct 276 AGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGG 335 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || || ||||||||||| || | | ||| Sbjct 336 C-CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTC 394 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||||| | | |||| | | || | || ||| |||| | Sbjct 395 CTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAG 453 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || || || ||||| || || || || ||||| ||||| Sbjct 454 TAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 493 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || |||||| ||||||||| |||||||| || |||| || Sbjct 49 AGACGGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 108 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || |||||||||||||| || | | ||| Sbjct 109 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGAATACCCTCC 168 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 169 TTGTCCTGGATCTTCTGCTT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055039579842