Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq447 132 1e-25 >seq447 Length=587387 Score = 132 bits (146), Expect = 1e-25 Identities = 560/873 (64%), Gaps = 21/873 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| || | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 396852 TTCCCCATCCGCTACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 396911 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || |||| || Sbjct 396912 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAGCAAC 396968 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| | || |||||||| ||| | || | || ||||| | | ||| || || ||| Sbjct 396969 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTG 397028 Query 243055 ATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || ||||| || | || ||| | ||| || ||| || ||||| || || Sbjct 397029 GCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCTT 397087 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||||| || ||| ||||| || || || | || || ||||| Sbjct 397088 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGA 397147 Query 243174 CGCGCTTATTTCAGATGAACA-AGAGCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | | || ||| | || | | | ||| || | || ||| ||||||||| | | | Sbjct 397148 CACC--TACGTCA-AGGACCCCATCGAGAAGGACCACCTCTTCCGCGCCATCGAGACCGT 397204 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCT-----AGAACCCGGTAAA 243285 || |||| | || ||||| | ||||| ||||||| | || | || | Sbjct 397205 GCCCTCGGTCAAGAAGAAGGCCGATTGGGCCATGAAGTGGATCAACAAGGAGGGTGTCGA 397264 Query 243286 T-CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | || || ||||| ||| | | | | ||| || || || | || ||||| || Sbjct 397265 GACCTTCGCCGAGCGCCTCATTGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAG 397324 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| ||||||| ||||| ||| || | ||||| ||||||| | ||| Sbjct 397325 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAA 397384 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| ||||| |||||||| ||| | |||| || | || | | Sbjct 397385 CGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCAT 397444 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 |||| ||||||| | ||| | ||| || |||||| || || || || | Sbjct 397445 GCTCGTAAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGAGAT 397504 Query 243525 CGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 || ||||||||| | ||| |||| | ||| || || ||||||||| | || Sbjct 397505 TGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTGGCC--CTCATCGGCATGAACGCCGAC 397562 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | ||| Sbjct 397563 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGAG 397622 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | ||||| || | | |||||||| || || || | || || Sbjct 397623 AAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTTATCTCCCTCGAGGGCAAG 397682 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT 243735 || |||||||||||| || ||| | || ||| Sbjct 397683 ACCAACTTCTTCGAACGCCGCGTCGGCGAGTAT 397715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102858507281350