Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq42 221 1e-52 seq447 98.7 1e-15 seq108 98.7 1e-15 >seq42 Length=72740 Score = 221 bits (244), Expect = 1e-52 Identities = 875/1359 (64%), Gaps = 32/1359 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || |||||||| |||| |||||| || | |||||||||| Sbjct 18762 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 18821 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||| | || | || ||||| ||| ||| | ||| || |||||| || Sbjct 18822 AGCTTAGCGAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 18881 Query 113717 CGTCCA-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 | | | ||||| || ||||| || || | | | | || |||||||| || | Sbjct 18882 -GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTT 18940 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| || ||||| || || || ||||| ||| |||| || | ||||| | Sbjct 18941 GTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGTACCGAGCCGTTGTGCGA 19000 Query 113836 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 ||| | | ||| | | |||||||| || || | || || || || Sbjct 19001 GACGAGCTTGTTCTTGAGCGCAGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAG 19060 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 |||| ||||| || || || || |||||| |||| | ||||| |||||||| Sbjct 19061 GTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGT 19120 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 ||| |||||||||||||| ||||| |||| ||| || | ||| ||||| ||||||||||| Sbjct 19121 GTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGG 19180 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| ||| || ||| || ||||| | | ||| | ||| | | |||| Sbjct 19181 CGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCA 19240 Query 114076 GTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGC 114135 ||| | || | | | | | ||| | || |||||| | || | ||| || Sbjct 19241 GTCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGC 19300 Query 114136 TGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGC 114192 ||||| ||||| | |||| ||| | ||||||||||| ||| | ||| ||| || Sbjct 19301 GGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTCGTTCGAG---GC 19357 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTTGGCCTCGT 114251 | ||||| |||| || || ||||| || || ||| | || | | |||||||| Sbjct 19358 GACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCG-GTTGAGCTCGCGGGCCTCGT 19416 Query 114252 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 114311 || || ||| | | || | || || || || || || || || || |||| || Sbjct 19417 CGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGC 19476 Query 114312 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCC 114368 | || || | || | ||| || || || || || ||| |||||| || | || Sbjct 19477 CGATGGGCCTGTGGCGCATGTTCGAGTTGCG---GGCCTCGGGCACGGGGTAGTAGTTGA 19533 Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428 | ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 19534 TGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGT 19593 Query 114429 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 114488 || |||| || | | ||| |||| || || |||| || ||||| || | Sbjct 19594 GGTC-GAACT-CG----CCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGC 19647 Query 114489 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 114548 |||| | ||| || ||||||| | | ||||| |||| || || || Sbjct 19648 ACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACT 19707 Query 114549 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 114608 |||||||| | || || || || ||||| ||| || || |||||||| ||||||| Sbjct 19708 GGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGT 19767 Query 114609 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGC--TGG 114666 | ||||| || ||||| | || |||| || ||||| ||| | || ||| || Sbjct 19768 AGGGCGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCACAGTTCCTGGGCCTTGA 19827 Query 114667 CACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT-CTT 114725 | | |||| || || ||||||| |||||| ||| | || |||| ||| Sbjct 19828 CCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTT 19885 Query 114726 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 114785 ||||| | || | || || || |||| | ||||| ||||| ||||| | || | Sbjct 19886 GCCCCAC-GAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGC 19944 Query 114786 CCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGAC 114845 || ||| || ||||||||||||||||| || ||||| || | |||||||||| || Sbjct 19945 CCGTCTCCACGCGCTTCATGAAGAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCG-- 20002 Query 114846 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 20003 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 20062 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 114942 |||||| || || ||||| | |||| | ||||| || Sbjct 20063 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 20101 Score = 116 bits (128), Expect = 4e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 || || || || ||| |||| ||||| | || |||| | |||| || ||||||| || Sbjct 20331 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCC 20390 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 20391 TCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGGTG 20450 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 20451 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGTGACAAGAGGTCGTAG 20510 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | |||||||| |||| ||| ||| | |||| | || ||||| | |||| Sbjct 20511 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 20570 Query 115310 TATTGGGGT 115318 | |||||| Sbjct 20571 TGCTGGGGT 20579 >seq447 Length=587387 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 397415 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 397356 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 397355 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 397296 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA----CTTTGTGTCAAACCACTTCA 126233 ||||| ||| ||| ||||| || |||| | ||| || ||| | |||||||| Sbjct 397295 GGCGAATCCAATGAGGCGCTCGGCGAAGG-TCTCGACACCCTCCTTGTTGATCCACTTCA 397237 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293 | ||||| | ||||| |||| || | || ||||||| ||| || ||||| | | Sbjct 397236 TGGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGTGGT 397177 Query 126294 TCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 ||| || ||| || || |||| ||| | || ||||| Sbjct 397176 CCTTCTC-GATGGGGTCCTTGACGTAGGTGTCGATGAG 397140 >seq108 Length=164275 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 ||| ||||| || |||||| || || |||||| ||| || |||||||| || ||||| Sbjct 12165 ACCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGCCAGGCCGGGCATGAGGCCGCGCTT 12224 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 ||| | |||||| || | || || | |||||||||||| ||||| || ||||| Sbjct 12225 CTTGAGCCAGAAGATGGAGCAG---GAGCTCGAGAAGAAGATGCCCTCGACGGCGGCGAA 12281 Query 126184 CGCAAAGAGACGCTCAGCAAAGG--AGCGCGACTT-TGTGTCAAACCACTTCATCGCCCA 126240 | | || |||| | |||||| || ||| ||| | | |||||| | |||||| Sbjct 12282 TCCGACCAGGCGCTGACCAAAGGTCTCTACGCCTTCGGTGGCGATCCACTTGAGCGCCCA 12341 Query 126241 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGG 126274 | ||||| |||| ||| |||||| ||||||| Sbjct 12342 GTCGGCCTTCTTCTTGATCGACGGGATGGTCTGG 12375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597342242814680