Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq42 383 2e-101 >seq42 Length=72740 Score = 383 bits (424), Expect = 2e-101 Identities = 930/1394 (67%), Gaps = 48/1394 (3%) Strand=Plus/Minus Query 94156 GGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTG 94215 || ||||| | | | |||||| ||||||| |||| ||||||||||||||||||||| | Sbjct 20113 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 20054 Query 94216 CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGAC 94272 | ||| |||||||| |||||||||||||| || ||||| | ||| | || Sbjct 20053 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGA---GGAGAACCGCGCCCGCGAT 19997 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 |||||||||| || ||| | || ||||| || ||||| ||||| |||| | || | Sbjct 19996 CTCTTCTACGGCCTGTGGATTCCCGACCTCTTCATGAAGCGCGTGGAGACGGGCGGCGAC 19937 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||| || ||||| ||||| || ||||| |||| ||| || || | || Sbjct 19936 TGGTCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTC 19877 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC---CAGGAAGGTTATGGATGCT 94449 || || ||| | || ||||| | ||||| || | | ||| | || | Sbjct 19876 GAGGAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGC--CC 19819 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 ||||| |||||| ||| | || ||| | ||||| || ||||||||||| || Sbjct 19818 AGGAA-CTGTGGTTCGCTATCCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTG 19760 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569 | ||||||| | ||||| |||||||||||||||||||||||| ||| || ||| Sbjct 19759 TACAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCG 19700 Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629 || |||||||| ||| | ||| |||| || || || |||||| | || ||||| |||||| Sbjct 19699 AACCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTG 19640 Query 94630 GGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGAT 94689 | ||| || ||| ||| ||| | ||| | || || |||||| Sbjct 19639 GCCTCGCTCGCGCTGCCCAAGTTCAT------------CAC--CAACGGCGA-GTTCGAC 19595 Query 94690 CTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGGTCTT---GAACCTGAACAGGGTAAT 94745 | || |||| | || || || ||||| ||||| |||||| |||| ||| || Sbjct 19594 CACAAGAAGCT---GCACGACGTCGTGAAGG-TGGTCACCAAGAACCTCAACAAGGTGAT 19539 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCAT 94805 ||||| |||| ||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 19538 CGACATCAACTACTACCCCGTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCAT 19479 Query 94806 CGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTC 94865 ||||||||| || ||||| | || |||| | |||| ||||| | || | || Sbjct 19478 CGGCATCGGAGTGCAGGGCCTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGAGAG 19419 Query 94866 TGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGA 94924 | ||| || ||| | | | | ||| ||||| | ||| || |||| ||| || Sbjct 19418 CGACGAGGCCCGCGAGCTCAACCGCGC-CATCTTCGAGACCATCTACTACGCCGCCCTGG 19360 Query 94925 AACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCG 94983 || | | | || ||| | | | ||| | || || | | | || ||| Sbjct 19359 TCGCCTCGAACGAGCTCGCGCAGGTTG-AGGGCAC-CTACCAGA--CCTACGAGGGCTCG 19304 Query 94984 CCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTAC 95043 ||| | |||||| | ||| |||||||||||| || ||| |||| || Sbjct 19303 CCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGG 19244 Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||| | || ||||| | | | | |||||| || ||| |||| || ||| Sbjct 19243 GACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTG 19184 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || ||||||||||||||||| || |||||||||| ||||||||||||| || || ||| Sbjct 19183 GCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCC 19124 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| ||||| | |||| | | || | |||||||| || ||| ||||| ||||| || Sbjct 19123 TACACGACCAACATCTACACCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAG 19064 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 ||||| || || || ||| | | || | ||| | |||||||| | || Sbjct 19063 CACCTTCTGCGCGAGCTGCAGCAGCGCGGCCTCTGGTCGCCTGCGCTCAAGAACAAGCT- 19005 Query 95284 CTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCT 95342 | | ||| ||||||||| || ||| |||| | | || || || ||||||||| ||| Sbjct 19004 CGTCTCGCACAACGGCTCGGTACAGCGCATCGAGGAGATCCCCGACGACATCAAGAAGCT 18945 Query 95343 CTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 |||||||||||||||||| ||||||||||||| || ||||| || |||| ||| Sbjct 18944 GTACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTC 18885 Query 95403 GCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCG--CGGA 95460 | ||| |||| |||||| |||| ||||||| ||| || Sbjct 18884 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCC--TCGTTCGCT 18827 Query 95461 AAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTAT 95520 || | || || ||| ||||||| ||| | ||||| ||||||||||| ||||| || Sbjct 18826 AAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTAC 18767 Query 95521 TTGCGAACCAGGCC 95534 | || ||| |||| Sbjct 18766 CTTCGCACCCGGCC 18753 Score = 174 bits (192), Expect = 2e-38 Identities = 303/438 (69%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| || || ||| ||||||||| ||| | | || |||| | | Sbjct 20644 TACTTTGGCTTCAAGACCCTCGAGCGCTCGTACCTCTTCAGGGTCGACGGCAAGATCGTA 20585 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || |||| |||||||| ||| |||| | ||| || |||| || Sbjct 20584 GAGCGACCCCAGCACATGCTCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCCCC 20525 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGG-ACAAGAGGTAT--ACCATGGCCACCCCG 93900 || | | | | | ||| | | ||| || | | ||| ||||||||| Sbjct 20524 GCCGTGATCGAGACCTAC---GACCTCTTGTCACAGCAGCTCTTCACCCACGCCACCCCG 20468 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 || || |||||||| || |||||| || ||| |||| ||||| ||||| | || | Sbjct 20467 ACGCTCTTCAACGCCGGCACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTCACCATG 20408 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 |||| ||||| ||| || || | ||||| ||||||| | ||||| |||||| || Sbjct 20407 AAGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGTGCCCTCATCTCCAAG 20348 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 | || || || ||||| || | ||| | | || ||| || ||||||||| Sbjct 20347 TCGGCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGC 20288 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || Sbjct 20287 GGCACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCC 20228 Query 94141 CGCTACGTGGACCAGGGT 94158 |||||||| ||||| ||| Sbjct 20227 CGCTACGTCGACCAAGGT 20210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713794075160