Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1307 84.2 2e-11 >seq1307 Length=263854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| || ||| | || || Sbjct 170571 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCA 170630 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||| || || ||||| || || || || ||| Sbjct 170631 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 170690 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | || | || | ||||||| |||||||| ||||| || | || || Sbjct 170691 ATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTT 170749 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || || || || || ||||| Sbjct 170750 GCCGGTTAGGGTCTTGACGAAGATCTGCAT 170779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994606289160