Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq42 230 3e-55 seq447 95.1 1e-14 >seq42 Length=72740 Score = 230 bits (254), Expect = 3e-55 Identities = 878/1359 (65%), Gaps = 32/1359 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 18762 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 18821 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||| | || | || ||||| ||| ||| | ||| || |||||| || Sbjct 18822 AGCTTAGCGAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 18881 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||||| || ||||| || || | | | | || |||||||| || || Sbjct 18882 GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTG 18941 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || ||||| || || || ||||| ||| |||| || | ||||| | | Sbjct 18942 TACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGTACCGAGCCGTTGTGCGAG 19001 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 || | | ||| | | |||||||| || || || || || || ||| Sbjct 19002 ACGAGCTTGTTCTTGAGCGCAGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGG 19061 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 |||| ||||| || || || || |||||| |||| | ||||||||||||||| Sbjct 19062 TGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTG 19121 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || |||||||||||||| ||||| |||| ||| || | || ||||| ||||||||||| Sbjct 19122 TAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGC 19181 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 |||| ||| || |||||| ||||| | ||| | ||| | | ||||| Sbjct 19182 GCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAG 19241 Query 116038 TCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || | || | | | | | |||| | || |||||| | || | |||||| Sbjct 19242 TCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCG 19301 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 116154 ||||| ||||| | |||| || | ||||||||||| ||| | ||| ||| || Sbjct 19302 GGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTCGTTCGAG---GCG 19358 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 116213 | ||||| |||| || || ||||| || ||| | || || | | ||||||||| Sbjct 19359 ACCAGGGCGGCGTAGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTC 19417 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 | || ||| | | || | || || || || || || || || || |||| ||| Sbjct 19418 GCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCC 19477 Query 116274 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCT 116330 || || | || | ||| || || || || || ||| |||||| || | || | Sbjct 19478 GATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGAT 19534 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 19535 GTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTG 19594 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 || || || || | | || || |||| || || |||| || ||||| || || Sbjct 19595 GTCGAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCA 19648 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 ||| | ||| || ||||||| | | ||||| |||| || || || Sbjct 19649 CACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTG 19708 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 |||||||| | || || || || ||||| ||| || || |||||||| ||||| || Sbjct 19709 GATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTA 19768 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC--TGGC 116628 ||||| || ||||| | || |||| || ||||| ||| | || ||| || | Sbjct 19769 GGGCGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCACAGTTCCTGGGCCTTGAC 19828 Query 116629 ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC-TTC 116687 | |||| || || ||||||| |||||| ||| |||| ||||| || Sbjct 19829 CACGCGGCGC--GCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTG 19886 Query 116688 ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACC 116747 ||||| | || | || || || |||| | || || ||||| ||||| | || || Sbjct 19887 CCCCAC-GAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCC 19945 Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGAC 116806 | ||| || ||||||||||||||||| || ||||| || |||| |||||||||| || Sbjct 19946 CGTCTCCACGCGCTTCATGAAGAGGTCGGGAATCCACAG-GCCGTAGAAGAGATCGCG-- 20002 Query 116807 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 20003 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 20062 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 |||||| || || ||||| | |||| | |||||||| Sbjct 20063 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 20101 Score = 113 bits (124), Expect = 6e-20 Identities = 214/315 (68%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || || || || ||| |||| ||||| | || |||| | |||| || ||||||| || Sbjct 20331 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCC 20390 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | | || ||||||||| ||||| || || | || || Sbjct 20391 TCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGGTG 20450 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 20451 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGTGACAAGAGGTCGTAG 20510 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | || | ||| |||| ||| ||| | |||| | || ||||| | |||| Sbjct 20511 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 20570 Query 117271 TATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTC 117330 | |||||| || | | | || |||| ||| |||||| ||| | |||| Sbjct 20571 TGCTGGGGTCGCTCTACGATCTTGCCGTCGACCCTGAAGAGGTACGAGCGCTCGAGGGTC 20630 Query 117331 TTGAGACCAAAATAG 117345 |||| ||||| ||| Sbjct 20631 TTGAAGCCAAAGTAG 20645 >seq447 Length=587387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/277 (69%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 397415 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 397356 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||| ||||||||||| ||||| || Sbjct 397355 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 397296 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGA--CTTTGTATCAAACCACTTCAT 127707 ||||| ||| || |||||||| |||| || | || | | | ||||||||| Sbjct 397295 GGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCAT 397236 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767 ||||| | ||||| |||| || | || ||||||| ||| || ||||| | | Sbjct 397235 GGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGTGGTC 397176 Query 127768 CTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 ||| || ||| || || |||| ||| | || ||||| Sbjct 397175 CTTCTC-GATGGGGTCCTTGACGTAGGTGTCGATGAG 397140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495535694360