Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq42 188 1e-42 seq447 178 2e-39 >seq42 Length=72740 Score = 188 bits (208), Expect = 1e-42 Identities = 524/779 (67%), Gaps = 26/779 (3%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| || ||||| |||| |||| | | | || ||||||||||||||| Sbjct 18723 TCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGTC 18782 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 18783 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTAGCGAACG-AGGGCTC 18841 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || ||||| |||||||| Sbjct 18842 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGGCCAT 18901 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGT-GT 204079 | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || ||| || Sbjct 18902 GTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATGTCGT 18960 Query 204080 TGAGGCACATCTTC-CCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 | || |||| | | | | ||| | ||||||||||| | | || | || | Sbjct 18961 CGGGG---ATCTCCTCGATGCGCTGTACCGAGCCGTTGTGCGAGACGAGCTTGTTCTTGA 19017 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | | ||| | | || ||| | |||||| |||| ||||| ||||| || Sbjct 19018 GCGCAGGCGACCAGA-GGCCGCGCTGCTGCAGCTCGCGCAGAAGGTGCTCGTTGACGACG 19076 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 ||||| |||| || | | |||||| | | |||| | ||| | || || || | Sbjct 19077 GTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCAC 19136 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || ||| Sbjct 19137 TCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAG 19196 Query 204317 TTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||||| ||||| | || | |||| || | || |||||| | | | Sbjct 19197 TTGCGCAGACCGTGCTGGGCGATGTTGGCGC-GGAGCGTGGCCCAGTCCCACCTGTCCGA 19255 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGAC-TGGGC-TGCCCTT 204432 || |||||||| | |||| ||| | || ||||| ||| |||| ||||| Sbjct 19256 CGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG---GACGCGGGCGAGCCCTC 19312 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATA 204492 ||| ||| | || | || | | || |||| | ||||||| ||| |||| || Sbjct 19313 GTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGCGTA 19372 Query 204493 GTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAAACGC 204549 ||| |||||||| ||||| | || || | || || |||||| || || || ||| Sbjct 19373 GTAGATGGTCTCGAAGAT-GGCGCGGTTGAGCTCGCGGGCCTCGTCGCTC--TCCCACGG 19429 Query 204550 CAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 | | || || || ||||| |||| ||||||||||||||| || | || |||| Sbjct 19430 GTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGT 19488 >seq447 Length=587387 Score = 178 bits (196), Expect = 2e-39 Identities = 545/836 (65%), Gaps = 19/836 (2%) Strand=Plus/Minus Query 159653 TCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTC 159712 ||||| ||||||||||||||||| | ||| || ||||| || ||| ||||| || Sbjct 397696 TCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATAAGCTCCATCCACGGGAACGGGTTGGTC 397637 Query 159713 ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATG 159772 || ||| ||||| | ||||| || || || | | ||| ||||| || |||||| Sbjct 397636 TGGTTGTAGTGCTTCTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCCACGAACTCGATG 397577 Query 159773 TAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGA 159832 || ||||| | || ||| || || | || ||||| |||| || | || Sbjct 397576 TACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGCAGCGACTCGGTCACG 397517 Query 159833 AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTACCCCGG 159891 || ||||||||||||||||| || ||| | |||||| | ||||| || | || Sbjct 397516 AATTCCTTCTCAATCTCGACGGCCTCGAGGATGATCTGCTTGGGCACGTCGGT-CGAGGG 397458 Query 159892 CTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||| | | ||| || | |||||||| || ||||||||||| || ||||| Sbjct 397457 CTTGTTTACGAGCATGGTGT------AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTC 397404 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 || || ||| | |||||| | | |||||| ||||||| || ||| ||||| Sbjct 397403 ATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 397344 Query 160009 CCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || |||| ||| |||| ||| || ||||| ||||| ||||| || || | | Sbjct 397343 CCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCAA 397285 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGT---CCACCTTTTGGCCCATTCAG 160124 ||| | ||| | || | || || | | | |||| | ||||||| || | Sbjct 397284 TGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCATGGCCCAATCGG 397225 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| || | |||| | ||||| |||| || | ||||| ||| | Sbjct 397224 CCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGTGGTCCTTCTCGATGG 397165 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||||||| || | || || ||||||||| || | ||| | || ||||||| Sbjct 397164 GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGG 397105 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTT 160304 | || || ||| |||||| | |||||| | ||||||||||| |||| | Sbjct 397104 CGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGC 397045 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| | || | |||||| ||| || ||||| |||| ||||| || Sbjct 397044 CGGCGAGATTCTCGGCCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGGACGTGCTTGA 396985 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAAT 160424 |||| || |||||||| ||| |||| | ||||||||| ||| ||| | || || Sbjct 396984 TGAAGTGCCTCTCGTCGTTGCTGAG---CGATTCCCAGTGCTTCATGTCGGAGCTCAGAT 396928 Query 160425 CAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 | || || || || |||| || |||| || | |||||||| |||||||| Sbjct 396927 CGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 396872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795140082111760