Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq666 113 3e-19 seq496 107 1e-17 seq1386 95.1 9e-14 seq1273 93.3 3e-13 seq615 93.3 3e-13 seq1182 91.5 1e-12 >seq666 Length=190869 Score = 113 bits (124), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1078766 GATTATTCATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAA 1078825 |||||||||||| || | |||||||| ||| | || | ||||| || |||||||| || Sbjct 182768 GATTATTCATCGCGATCTCAAGCCATCCAATCTGCTGGTGGATGAGAACTGGAATGTGAA 182827 Query 1078826 AATTGCCGATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGG 1078885 | |||||||| || || || |||||||| || |||||||||| |||||| || || || Sbjct 182828 GGTGGCCGATTTCGGGTTCGCGCGCATCAAGGAGGAGAACGCCACCATGACCCGCTGCGG 182887 Query 1078886 TACTCCTTGTTGGACTGCTCCTGAAAT 1078912 || || || ||||| || || || || Sbjct 182888 CACGCCCTGCTGGACCGCACCCGAGAT 182914 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1065101 CCAATTATTATTCATCGTGACATTAAACCATCCAATATTCTAGTTGATGATAGTATGAAT 1065160 || || ||||||||||| || | || ||||||||| | || || ||||| | |||| Sbjct 182763 CCGATGATTATTCATCGCGATCTCAAGCCATCCAATCTGCTGGTGGATGAGAACTGGAAT 182822 Query 1065161 GTGAAAATTGCTGATTTTGGATTTGCACGTATCAAAGAGGAAAATTCCGTAATGACACGT 1065220 ||||| | || ||||| || || || || ||||| ||||| || || ||||| || Sbjct 182823 GTGAAGGTGGCCGATTTCGGGTTCGCGCGCATCAAGGAGGAGAACGCCACCATGACCCGC 182882 Query 1065221 TGTGGAACTCCTTGTTGGACTGCTCCTGAAATTATTCGTGGAGAAAAATATACAGAGAAA 1065280 || || || || || ||||| || || || || | || || || || || | ||| Sbjct 182883 TGCGGCACGCCCTGCTGGACCGCACCCGAGATACTCCGCGGCGAGAAGTACTCTGAGTCC 182942 Query 1065281 GTAGATGTATTCTCTTTTGGAATTGTTATGTGGGAAGT 1065318 | || || | ||| || || || | |||||||| || Sbjct 182943 GCGGACGTTTACTCGTTCGGCATCATCATGTGGGAGGT 182980 >seq496 Length=104993 Score = 107 bits (118), Expect = 1e-17 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 1086707 GTCTACGTCATCCCAATGTGGTTTTGTTTATGGCTGCTAGTACAAAATCACCAAATATGT 1086766 |||| || || ||||| ||||| | || ||||| || | || | | || | ||| Sbjct 88027 GTCTGCGGCACCCCAACGTGGTCCTCTTCATGGCCGCCTGCACGCGACCGCCGCGTCTGT 88086 Query 1086767 GTATTGTGATGGAGTTTATGTCTCTTGGATCTCTTTACGATCTTCTTGGTAACGAACTTA 1086826 | || ||||||||||| ||| | || || || || ||||| || || ||||| || | Sbjct 88087 GCATCGTGATGGAGTTCATGGCGCTCGGGTCGCTCTACGACCTGCTCCAGAACGAGCTCA 88146 Query 1086827 TTCCAGAAATTCCTTATGCTCTTAAAATTAAGATGGCTTATCAGGCTTCAAAAGGTATGC 1086886 | || || ||||| | | || || | |||||||| || ||||| | || || |||| Sbjct 88147 TACCGGACATTCCCCACGGCCTCAAGTTCAAGATGGCCTACCAGGCGGCCAAGGGCATGC 88206 Query 1086887 ATTTTCTTCATTCATCAGGTATTGTTCATCGAGATTTGAAGTCGCTTAATTTGCTTTTGG 1086946 | || || || || || || || || || || || | |||||||| || |||| | | Sbjct 88207 ACTTCCTCCACTCGTCGGGCATCGTGCACCGCGACCTCAAGTCGCTCAACCTGCTCCTCG 88266 Query 1086947 ATTCAAAATGGAATGTCAAGGT 1086968 | | || |||||||||||||| Sbjct 88267 ACGCCAAGTGGAATGTCAAGGT 88288 Score = 95.1 bits (104), Expect = 9e-14 Identities = 192/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 1076705 GGATGAAGTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGC 1076764 ||| || || |||| |||| | |||| || || ||||| || || |||||||| || Sbjct 88004 GGACGAGGTGCGAGTCATGAGCCGTCTGCGGCACCCCAACGTGGTCCTCTTCATGGCCGC 88063 Query 1076765 TTCAACAAAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTCATTGCA 1076824 | || ||| || |||| || || ||||| |||||||| || || || | | Sbjct 88064 CTGCACGCGACCGCCGCGTCTGTGCATCGTGATGGAGTTCATGGCGCTCGGGTCGCTCTA 88123 Query 1076825 TGATTTGTTGAAAAACGAACTCATCCCAGATATACCTTTTGCTCTCAAAGTCAAAATCGC 1076884 || || | | ||||| ||||| || || || || | ||||| |||| || || Sbjct 88124 CGACCTGCTCCAGAACGAGCTCATACCGGACATTCCCCACGGCCTCAAGTTCAAGATGGC 88183 Query 1076885 ATATCAAGCATCAAAGGGTATGCATTTCCTGCATTCATCAGGAATCACTCATCGTGATCT 1076944 || || || | ||||| ||||| ||||| || || || || ||| || || || || Sbjct 88184 CTACCAGGCGGCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCACCGCGACCT 88243 Query 1076945 CAAGTCTTTGAATCTACTTCTTGACATTAAGTGGAATGTTAAAGT 1076989 |||||| | || || || || ||| ||||||||||| || || Sbjct 88244 CAAGTCGCTCAACCTGCTCCTCGACGCCAAGTGGAATGTCAAGGT 88288 >seq1386 Length=821962 Score = 95.1 bits (104), Expect = 9e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1076712 GTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACA 1076771 || || |||||||| | ||||||| || ||||| || || |||||||| || || || Sbjct 768168 GTGAGGGTAATGACGGCGCTGCGACACCCCAACGTGGTGCTGTTCATGGCAGCGTCGACC 768227 Query 1076772 AAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 || |||||||| ||||||||||| ||||| |||||||| || || || Sbjct 768228 AAGCCACCCAAGATGTGTATTGTGATGGAGTTCATGGCCCTCGGATC 768274 >seq1273 Length=5398 Score = 93.3 bits (102), Expect = 3e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1078806 GATGAAAATTGGAATGTCAAAATTGCCGATTTTGGATTTGCTCGCATCAAAGAAGAGAAC 1078865 || || ||||||||||| || | ||||| ||||| ||||| || ||||| || |||||| Sbjct 763 GACGAGAATTGGAATGTGAAGGTGGCCGACTTTGGGTTTGCGCGGATCAAGGAGGAGAAC 704 Query 1078866 GCCATCATGACTCGTTGTGGTACTCCTTGTTGGACTGCTCCTGAAATTATTCGTAATGAT 1078925 || | |||||||| || || || || |||||||| || || || || || || || Sbjct 703 GCGACGATGACTCGATGCGGCACGCCCTGTTGGACGGCGCCGGAGATCATCCGCGGCGAG 644 Query 1078926 ATCTATGACGAAAAGGTCGATGTATTTTCTTTTGGAATTGTTATGTGGGAAGTATTGAC 1078984 | || || || || |||||| || || || || | | |||||||| || |||| Sbjct 643 AAGTACGATGAGCGGGCCGATGTGTTCTCGTTCGGCGTGATCATGTGGGAGGTGCTGAC 585 >seq615 Length=307551 Score = 93.3 bits (102), Expect = 3e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1076718 GTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACAAAACCA 1076777 || ||||| | ||||| ||||| ||||| || || |||||||| || || || |||||| Sbjct 301786 GTGATGACGGCGTTGCGGCATCCGAACGTGGTCCTGTTCATGGCCGCCTCCACCAAACCA 301727 Query 1076778 CCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 ||||| |||||||| | ||||| | ||||||||| ||||| Sbjct 301726 CCCAAGATGTGTATCATCATGGAGTACATGGCTCTCGGCTC 301686 >seq1182 Length=1895500 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1078773 CATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCC 1078832 || || ||| | ||||| || ||| | ||| |||| || || ||||| || || | ||| Sbjct 1215270 CACCGCGACCTCAAGCCCTCCAATCTGCTCGTCGACGAGAACTGGAACGTGAAGGTGGCC 1215211 Query 1078833 GATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCT 1078892 || || || || || |||||||| ||||||||||||| |||||| || || || || || Sbjct 1215210 GACTTCGGGTTCGCGCGCATCAAGGAAGAGAACGCCACCATGACCCGCTGCGGCACCCCC 1215151 Query 1078893 TGTTGGAC 1078900 || ||||| Sbjct 1215150 TGCTGGAC 1215143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780746922969826