Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1386 396 3e-105 seq1182 208 1e-48 >seq1386 Length=821962 Score = 396 bits (438), Expect = 3e-105 Identities = 1068/1629 (66%), Gaps = 11/1629 (1%) Strand=Plus/Minus Query 6523 GTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTT 6582 |||||| ||||| | ||||| ||||||||||| | | | || || || || | || Sbjct 217862 GTAGTTCTCGAGGGCGTTCTTGGCCTCGACCTTCTCCTTGGCGTTCTCGTCGTCGTTCTT 217803 Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 ||||| || || || | |||||| || || || || || || | | ||||| || Sbjct 217802 GTACTTCTCGGCCTCCTTGACCATGCGCTCGATCTCCTCCTTGGAGAGACGGCCCTTGTC 217743 Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702 || || || || ||||| ||||| ||| | || ||| || | || | || || | Sbjct 217742 GTTGGTGATGGTGATCTTCTCGGAGCGACCGGTGGTCTTGTCGGCGGCGTTGACGTTGAG 217683 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 ||||| || || |||| ||||| | || | || || || ||| | || |||| Sbjct 217682 GATACCGTTGGCGTCAATGTCGAAGGTGACCTCGATCTGGGGCACACCGCGGGGCGCGGG 217623 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 || || |||| | || || | || || | |||| || | | | ||| || Sbjct 217622 GGGGATGCCCGAGAGCTCGAACTTGCCGAGGAGGTTGTTGTCGCGGGTCATGGCACGCTC 217563 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882 || || ||||| | || ||| | || || || || || ||||||| || Sbjct 217562 GCCCTCGTAGACCTGGATGAGCACGCCGGGCTGGTTGTCCGAGTAGGTGGAGAAGACCTG 217503 Query 6883 TTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCAT 6942 ||||| | || || || || || | || || | || |||||| | ||||| Sbjct 217502 GGTCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCGCGGTCATGACGCCACCGGC 217443 Query 6943 AGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTT---GAACAGA 6999 || || | || || | || || || ||||| | ||| | || ||| | || || Sbjct 217442 GGTCTCAATGCCGAGGGTGAGCGGGGTGACGTCGATGAGGAGCACGTCACCGAGGACGGA 217383 Query 7000 T---TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 ||| || |||| | | ||||||||| ||||| | || ||||| ||||| || Sbjct 217382 GCCCTCGGTCGAGGCACCGCTGAGGATGGCGGCCTGGACGGCGGCACCGTAGGCGACGGC 217323 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTG 7116 ||| |||||||| |||| || | || || ||||| || | | | | | || Sbjct 217322 CTCGTCGGGGTTGATCGACTTGCAGGGCTCCTTGCCGTTGAAGAACTGGGTGACGAGCTG 217263 Query 7117 TTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTT 7176 || || || ||||| || || || |||||||| | |||| || |||| | || Sbjct 217262 CTGGATCTTGGGGATACGGGTGGAGCCACCGACGAGCACGACCTCGCTCACGGTGCGCTT 217203 Query 7177 ATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTC 7236 || ||||| | ||| || || || ||||| || ||||| |||||| | || Sbjct 217202 GTCCATCTTGGCGTCGCGGAGCACCTTCTCGACGGGGTCCATGGTCGAACGGAAGAGATC 217143 Query 7237 CATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTA 7296 || || ||||| ||||| |||||||| ||||| || ||||| || || || ||| | Sbjct 217142 AGCGCAGAGCTCCTCGAAACGGGCACGGGTGATGGAGGTGTAGAAGTCGACACCCTCGAA 217083 Query 7297 TAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTC 7356 | ||| || || |||||| | || || | | ||| || | | ||||| || | ||| Sbjct 217082 GAGCGAGTCGATCTCAATGTTGGTCTGGGTGGCCGACGACAGAGCGCGCTTGGCCCTCTC 217023 Query 7357 ACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTT 7416 || || || || | |||||| | ||| || | ||| ||||| || || || | || || Sbjct 217022 GCAGGCGGTACGGAGACGACGGACGGCGCGGGCGTTGCCGGAGATGTCCTTGCTGTGCTT 216963 Query 7417 ACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAA 7476 || || ||||| | |||||| | | | ||||| || ||||| || | Sbjct 216962 GCGCTTGAACTCCTGGATGAAGTGGGTGACCATGCGGTTGTCGAAGTCCTCACCGCCGAG 216903 Query 7477 GTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGA 7536 ||| || || || ||||| || ||||| || ||||| || | || ||| | | | ||| Sbjct 216902 GTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATGCCCTCCTCGATGGTCAGGAGCGA 216843 Query 7537 AACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT 7596 || || || ||||| || || || || || ||||| |||||| | ||| | | || Sbjct 216842 CACGTCGAAGGTACCGCCGCCGAGATCGAAGATGAGGACGTTCATCTCGCCCTGCGACTT 216783 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGT 7655 ||| ||||||||||||||||| || || || || || || || || ||||| ||| | Sbjct 216782 CTTGTCGAGACCGTACGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGCTTGAC-CT 216724 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 || ||| | || || | ||||| || || || || || ||||| ||||| ||||||| Sbjct 216723 GCATGCCGGAGATGGTACCGGCATCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGG 216664 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | || || || | ||| || ||| | ||||| || | || ||| | || | Sbjct 216663 CGGGCACGGTGATGACGGCCGAGTTGATGGGGTGGCCGAGGTAGGCCTCAGCGGTCTCCT 216604 Query 7776 TCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGT 7835 |||| ||| | || |||||||| || | ||| || | | |||| || || || || | Sbjct 216603 TCATCTTGATGAGGACCATCGACGAGACCTCCTCGGGGGAGAACTCCTTGGTCTCGCCCT 216544 Query 7836 TAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAAT 7895 | | || || || | ||| || || | | ||| ||||| ||| ||| | Sbjct 216543 TGTACTCGACGGAGATGAAGGGCTTGTCGCCGGGCTTCTGGACGACCTTGAACGGCCAGT 216484 Query 7896 CTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCAT 7955 ||||| ||| |||| || ||||||| || || | ||||| |||||||| |||| Sbjct 216483 GCTTCATGTCGGCTTGCACGATGGGGTCCGAGAAGTTACGGCCGATCAGACGCTTGGCAT 216424 Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 | || || ||||| | ||||||||||| |||||||| || || || ||||| |||| Sbjct 216423 CGAACACGGTGTTGTGCGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCCGATGAGAC 216364 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 | || | || || || || |||||||| |||||| || || || || ||||| | Sbjct 216363 GCTC---GCTGTCGGTGAAGGCCACGTACGACGGGGTCACGCGGTTACCCTGATCGTTGG 216307 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | || || || ||||| ||||| ||||| ||||| |||||||| || || || || | || Sbjct 216306 CGATGATCTCGACGCGATCGTTCTGCCACACGCCCACGCACGAGTAGGTCGTGCCCAGAT 216247 Query 8136 CAATACCGA 8144 | ||||||| Sbjct 216246 CGATACCGA 216238 >seq1182 Length=1895500 Score = 208 bits (230), Expect = 1e-48 Identities = 420/615 (68%), Gaps = 15/615 (2%) Strand=Plus/Minus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| ||||| || ||||||||||||| ||| || | ||| | |||| | || | | | Sbjct 478125 CGACACATCGAAGGTACCACCACCCAAGTCGAACACGAGAATGTTCTTCTCACCCT---T 478069 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GAC 7652 | || | ||||||||||||||| || || || || || || || || || || | ||| Sbjct 478068 GACCTCGTTGAGACCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGACGAC 478009 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 ||| || || || || | ||||| || || || || || || | ||||| |||| Sbjct 478008 -GTTGAGACCGGCGATGACACCGGCATCCTTGGTGGCCTGACGCTGGGCGTCGTTGAAGT 477950 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 |||||||||| || ||||| |||| | |||| |||| || || || | || ||||| | Sbjct 477949 AGGCCGGGACGGTGACGACGGCGTTCTTGACGGTCTTGCCAAGGTAGGCCTCGGCGATCT 477890 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCAC 7832 | ||||| |||||||| ||||| | |||||||| || | || |||| || | || Sbjct 477889 CCTTCATCTTGGTAAGGACCATGGCGGAAATCTCCTCGGGGGCGAACTCCTTGGCCTCGT 477830 Query 7833 CGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGAC 7891 || | || || | || ||| || || | | | ||| | ||| |||| | Sbjct 477829 TCTTGTACTCGACGCCGATGTAGGGCTT----GCCGTTCTTGTTGATGATCTTGTACGGC 477774 Query 7892 CAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTT 7951 || |||| | ||||||| | ||| | || || | ||||| |||||||| Sbjct 477773 AGGAGCTTGGCATCGGCCTGGACCTCCTTGTCGGCGAAGTTGCGACCGATCAGACGCTTG 477714 Query 7952 GCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATA 8011 | ||||| || ||||| | ||||| | || | || ||||| || ||||| ||||| Sbjct 477713 ACGTCAAAGACAGTGTTCTCAGGGTTGAGCGCGGCCTGATTCTTGGCGGCGTCACCGATG 477654 Query 8012 AGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCG 8071 || || || | | |||| ||||| ||||| || ||||| |||| || || |||||| Sbjct 477653 AGGCGCTC---ACTGTCCGAGAACGCCACGTAGGACGGGGTGATTCGGTTACCCTGGTCG 477597 Query 8072 TTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC-GAATACGTTGTTCC 8130 || || || || || || ||| | || | ||||| ||| || ||| || || || || || Sbjct 477596 TTGGCGATGATGTCCACTCGGCCATTCTTCCAGATGCCTAC-CACGGAGTAGGTCGTGCC 477538 Query 8131 TAAATCAATACCGAT 8145 | ||| |||||||| Sbjct 477537 GAGATCGATACCGAT 477523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120724537640