Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq42 145 9e-30 seq447 107 2e-18 seq108 93.3 5e-14 >seq42 Length=72740 Score = 145 bits (160), Expect = 9e-30 Identities = 649/1013 (64%), Gaps = 30/1013 (3%) Strand=Plus/Minus Query 111987 CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 |||||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 20101 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 20042 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 20041 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 19982 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 |||||||| || |||||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 19981 TGGATTCCCGACCTCTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 19922 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || || |||| ||||| || | || | ||| ||||||| || | ||| Sbjct 19921 CCCAACGAGGCCCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 19862 Query 112227 AAGTACGAGGAAGAAAGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 112282 |||||| | || | || ||| | ||| ||| | || ||| || ||||| Sbjct 19861 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAACTGTGGTT 19806 Query 112283 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTG 112342 ||||| || |||| || | |||||| || || || || ||||| ||||| |||||||| Sbjct 19805 CGCTATCCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 19746 Query 112343 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGA 112402 ||| ||| || || || | | || ||| || || ||||| || || || Sbjct 19745 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 19686 Query 112403 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 112462 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 19685 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 19626 Query 112463 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 112522 ||||||| | ||| | | | || || | | || || ||||| || Sbjct 19625 GCCCAAGTTCAT--CACCAACGGCGA----GTTCGACCACAAGAAGCTGCACGACGTCGT 19572 Query 112523 GAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 112579 ||| ||||| || ||||| |||| || || || | || | |||||||| || Sbjct 19571 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 19512 Query 112580 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGC 112639 | || || || || || ||| | ||| | || || || |||| || || || || || Sbjct 19511 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 19455 Query 112640 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 112698 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 19454 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 19395 Query 112699 CGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAG 112755 ||| || || ||||| || || ||||||| || | || ||| ||| | || Sbjct 19394 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGC---CTCGAACGAGCTCGCGC 19339 Query 112756 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAA 112814 ||||||| || | || | |||| ||||| || || || || |||||| ||| || Sbjct 19338 AGGTTGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAG 19280 Query 112815 TTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGC 112874 || | |||| | | | | | | ||||||| | | ||| | | Sbjct 19279 CCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAAC 19220 Query 112875 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACC 112934 ||| || | ||||| || ||| || | |||| || ||||| || ||||| ||| Sbjct 19219 ATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACC 19160 Query 112935 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 19159 TCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 19107 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| || || || ||||||||||| || || || | || || |||| Sbjct 20485 TTCACCCACGCCACCCCGACGCTCTTCAACGCCGGCACCCCGCGCCCGCAGCTGTCGTCG 20426 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||||| | | | |||||||| || ||| | ||||| |||| ||| |||| | Sbjct 20425 TGCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAG 20366 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGG 111859 ||||||| ||||| |||| ||| || || ||||| Sbjct 20365 TGTGCCCTCATCTCCAAGTCGGCCGGCGGCATCGG 20331 >seq447 Length=587387 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | || ||||| |||||| | || || || | | | ||||| || ||| Sbjct 397170 GAGAAGGACCACCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAGGCCGAT 397229 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAG----TCGCGTTCCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||||||||| | | | || ||| | |||| || ||||| ||| | | Sbjct 397230 TGGGCCATGAAGTGGATCAACAAGGAGGGTGTCGAGA-CCTTCGCCGAGCGCCTCATTGG 397288 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 397289 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 397348 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 397349 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 397408 Query 102314 ACTCCAC 102320 |||||| Sbjct 397409 CCTCCAC 397415 >seq108 Length=164275 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||| | |||| || ||| ||| || || ||||| ||||||||||| | |||| Sbjct 12304 CCTTTGGTCAGCGCCTGGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCGAGCTCCT 12245 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | || | |||||||||||||| || |||||||| || || ||||||||||| Sbjct 12244 GCTCC---ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTCTCCAACG 12188 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 |||| ||| ||| ||||| || Sbjct 12187 AGCTCATCAGTCGCGACGAAGG 12166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730598135120