Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq42 179 4e-40 seq447 96.9 4e-15 seq108 86.0 7e-12 >seq42 Length=72740 Score = 179 bits (198), Expect = 4e-40 Identities = 878/1373 (64%), Gaps = 52/1373 (4%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCGTACATATGCATTGA 109463 |||||| || ||||| || || ||||| || ||| ||| ||||| | ||||| || Sbjct 18761 GCGAAGGTAGTACATGCCGGTCTTGAGGCC---CTTGCGCCAGGCGTAGAAGTGCATCGA 18817 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGA 109522 | ||| || | | | || ||| || || | | ||| | |||||| ||| |||| Sbjct 18818 GGTGAGCTTAGCGAACGAGGG-CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGA 18876 Query 109523 TGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGAC 109580 || | | | | ||||| || |||||||||||||| || | | | | | |||| || Sbjct 18877 TGTAG-GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCT-CCCACAC 18934 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC 109640 |||||||||| |||||||| || ||||| || ||| ||||| || | ||||| Sbjct 18935 GGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGTACCGAGCCGTT 18994 Query 109641 AGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | || | | ||| | | | ||||||||| ||| || | || ||| Sbjct 18995 GTGCGAGACGAGCTTGTTCTTGAGCGCAGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCG 19054 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | ||| |||| |||||| ||| || || || || || |||| ||| ||||||||| Sbjct 19055 CAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTT 19114 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 ||||||||||| || || ||||| |||||||| ||||| || | || || || ||||| Sbjct 19115 GGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGG 19174 Query 109821 CATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT--TCGTCTTTACCCGCTCACGCATT 109878 |||||| |||| ||| || ||| || ||||| | | | | | | | ||| Sbjct 19175 CATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGAT----GTTGGCGCGGA 19230 Query 109879 GCGT--CCCAATCATAAC-GACC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTG 109934 |||| |||| || | | | || || | | | | |||| | || || || Sbjct 19231 GCGTGGCCCAGTCCCACCTGTCCGAC--------GGCACGACGCCCCAGAGGTCGGGCTG 19282 Query 109935 AAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGC 109994 || |||| | || || || |||| | | ||| ||| | |||||||||| || Sbjct 19283 GAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGC 19342 Query 109995 CAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 | |||| || || | || || || | || || ||||| || || | || | | Sbjct 19343 GAGCTCGTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGAT-GGCGCGGT--T 19399 Query 110055 GAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAG 110111 ||| ||| | ||| || | || | || | | | || || || || || || Sbjct 19400 GAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAG 19459 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||| || |||| || ||||| | || |||||| ||| || || || Sbjct 19460 GCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCAC 19519 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 |||||| ||||| |||||| ||| ||||| ||||| || || |||| || || Sbjct 19520 GGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTC 19579 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 || || || | || |||||| ||| | || ||| | ||||| || || | Sbjct 19580 GTGCAGCTTCTTGTGGTCGAAC----TCG--CCGTTGGTGATGAACTTGGGCAGCGCGAG 19633 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTA 110349 || || || |||||||| | |||||| | || ||||| | | | ||||| Sbjct 19634 CGAGGCCAGGTTGCACACGGCCACCTCGTC--GGGCGACGTGTACTGGACGACCTCCGTG 19691 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 |||| ||| || || ||| || | || || ||| || || ||| |||||| || Sbjct 19692 CACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCG 19751 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| || |||||||| || || || || || |||| |||| || || || ||| Sbjct 19752 TCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCAC 19811 Query 110470 ACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || ||| ||| | ||| ||| | || |||| |||||| |||| Sbjct 19812 AGTTCCTGGGCCTTGACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACT 19869 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 ||||| || |||| || || ||| | || || |||| || ||| || |||| Sbjct 19870 TCTCCTCGAACTCCTTGCCCCACGAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGA 19929 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | ||||| | || ||| ||| || | ||||||||| ||||| |||||||||| |||| Sbjct 19930 GCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAAGAGGTCGGGAATCCACA-GGCCG 19988 Query 110648 -AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 |||| || || ||| || ||| || | || ||||| || || | ||| Sbjct 19989 TAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAG 20048 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 || | ||| |||| |||||| || ||||| |||| |||| | ||||| || Sbjct 20049 TCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 20101 >seq447 Length=587387 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 397414 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 397355 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 397354 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 397295 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGA-----CTTGTCGAACCACTTGAGA 119681 ||||| | | || ||||| || || | |||| | ||||| || |||||| | Sbjct 397294 GCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCATG 397235 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||| | |||||| || | |||| || || | |||||| ||| || || | | Sbjct 397234 GCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGTGGTCC 397175 Query 119742 TTTTC 119746 || || Sbjct 397174 TTCTC 397170 >seq108 Length=164275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/188 (71%), Gaps = 9/188 (5%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || ||| ||||||||| || |||| || || |||||||| || | ||| Sbjct 12166 CCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGCCAGGCCGGGCATGAGGCCGCGCTTC 12225 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || | || || |||||||||||||| || |||||| Sbjct 12226 TTGAGCCAGAAGATGGAGCAGGAGCTC---GAGAAGAAGATGCCCTCGACGGCGGCGAAT 12282 Query 119634 GCGAATAGACGCTCAGCAAAAG-GTCGA-GACT----TGTCGAACCACTTGAGAGCCCAG 119687 ||| || |||| | |||| | || | | || || ||| ||||||||| |||||| Sbjct 12283 CCGACCAGGCGCTGACCAAAGGTCTCTACGCCTTCGGTGGCGATCCACTTGAGCGCCCAG 12342 Query 119688 TTGGCCTT 119695 | |||||| Sbjct 12343 TCGGCCTT 12350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964802093800